Detailed information of ANN35553-RA in Leptoseris scabra

Genomic Location: Scaffold_132__1_contigs__length_52012:35952...36833
NR annotation: HCS81362.1, Fe/S-dependent 2-methylisocitrate dehydratase AcnD [Alteromonas macleodii]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8EJW32-methylcitrate dehydratase (2-methyl-trans-aconitate forming) OS=Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1) OX=211586 GN=acnD PE=1 SV=1
Q937N8Aconitate hydratase A OS=Cupriavidus necator OX=106590 GN=acnM PE=1 SV=1
Q1RKD5Aconitate hydratase A OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=acnA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002405 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00330
all species →		AconitaseAconitase family (aconitate hydratase)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001030
all species →		DomainAconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domainInterproscan
IPR036008
all species →		Homologous_superfamilyAconitase, iron-sulfur domainInterproscan
IPR015931
all species →		Homologous_superfamilyAconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3Interproscan
IPR006249
all species →		FamilyAconitase/Iron-responsive element-binding protein 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11670
all species →		ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003994
all species →		Molecular Functionaconitate hydratase activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006099
all species →		Biological Processtricarboxylic acid cycleInterproscan
GO:0006101
all species →		Biological Processcitrate metabolic processInterproscan
GO:0030350
all species →		Molecular Functioniron-responsive element bindingInterproscan
GO:0051539
all species →		Molecular Function4 iron, 4 sulfur cluster bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN35553-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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