Gene detail

Detailed information of ANN35564-RA in Leptoseris scabra

Genomic Location: Scaffold_1713__1_contigs__length_25414:23028...24969
NR annotation: MBO9492745.1, lipoyl synthase [Thalassotalea sp. G20_0]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1U380	Lipoyl synthase OS=Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8) OX=351348 GN=lipA PE=3 SV=1
Q5WYF5	Lipoyl synthase OS=Legionella pneumophila (strain Lens) OX=297245 GN=lipA PE=3 SV=1
Q5X703	Lipoyl synthase OS=Legionella pneumophila (strain Paris) OX=297246 GN=lipA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004493 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16881 all species →	LIAS_N	N-terminal domain of lipoyl synthase of Radical_SAM family	Family	Interproscan
PF04359 all species →	DUF493	Protein of unknown function (DUF493)	Domain	Interproscan
PF04055 all species →	Radical_SAM	Radical SAM superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004143 all species →	Domain	Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR000544 all species →	Family	Octanoyltransferase	Interproscan
IPR031691 all species →	Domain	Lipoyl synthase, N-terminal	Interproscan
IPR003698 all species →	Family	Lipoyl synthase	Interproscan
IPR020605 all species →	Conserved_site	Octanoyltransferase, conserved site	Interproscan
IPR007197 all species →	Domain	Radical SAM	Interproscan
IPR007454 all species →	Family	Uncharacterised protein family UPF0250, YbeD-like	Interproscan
IPR027471 all species →	Homologous_superfamily	YbeD-like domain superfamily	Interproscan
IPR006638 all species →	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10949 all species →	LIPOYL SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0036211 all species →	Biological Process	protein modification process	Interproscan
GO:0009249 all species →	Biological Process	protein lipoylation	Interproscan
GO:0033819 all species →	Molecular Function	lipoyl(octanoyl) transferase activity	Interproscan
GO:0009107 all species →	Biological Process	lipoate biosynthetic process	Interproscan
GO:0016992 all species →	Molecular Function	lipoate synthase activity	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35564-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.