Gene detail

Detailed information of ANN35565-RA in Leptoseris scabra

Genomic Location: Scaffold_407__1_contigs__length_38553:17743...18723
NR annotation: WP_054552893.1, MULTISPECIES: phenylalanine--tRNA ligase subunit alpha [Pseudoalteromonas]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1S702	Phenylalanine--tRNA ligase alpha subunit OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=pheS PE=3 SV=1
A4Y6G8	Phenylalanine--tRNA ligase alpha subunit OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224 GN=pheS PE=3 SV=1
Q0HUP8	Phenylalanine--tRNA ligase alpha subunit OS=Shewanella sp. (strain MR-7) OX=60481 GN=pheS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004071 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02912 all species →	Phe_tRNA-synt_N	Aminoacyl tRNA synthetase class II, N-terminal domain	Domain	Interproscan
PF01409 all species →	tRNA-synt_2d	tRNA synthetases class II core domain (F)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004188 all species →	Domain	Phenylalanine-tRNA ligase, class II, N-terminal	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR002319 all species →	Domain	Phenylalanyl-tRNA synthetase	Interproscan
IPR022911 all species →	Family	Phenylalanine-tRNA ligase alpha chain 1, bacterial	Interproscan
IPR010978 all species →	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR004529 all species →	Family	Phenylalanyl-tRNA synthetase, class IIc, alpha subunit	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11538 all species →	PHENYLALANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004826 all species →	Molecular Function	phenylalanine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006432 all species →	Biological Process	phenylalanyl-tRNA aminoacylation	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01889	FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain	EC:6.1.1.20	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.