Gene detail

Detailed information of ANN35580-RA in Leptoseris scabra

Genomic Location: Scaffold_929__1_contigs__length_31496:29491...29922
NR annotation: WP_058069495.1, ribonuclease E activity regulator RraA [Pseudomonas sp. TTU2014-080ASC]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B7VBA7	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=PLES_35571 PE=3 SV=1
Q02KR3	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=PA14_41640 PE=1 SV=1
Q9I2W7	Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=PA1772 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008821 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03737 all species →	RraA-like	Aldolase/RraA	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010203 all species →	Family	Regulator of ribonuclease activity A	Interproscan
IPR005493 all species →	Family	Ribonuclease E inhibitor RraA/RraA-like protein	Interproscan
IPR036704 all species →	Homologous_superfamily	Ribonuclease E inhibitor RraA/RraA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33254 all species →	4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008428 all species →	Molecular Function	ribonuclease inhibitor activity	Interproscan
GO:0051252 all species →	Biological Process	regulation of RNA metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02553	rraA, menG; regulator of ribonuclease activity A	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.