Gene detail

Detailed information of ANN35585-RA in Montipora grisea

Genomic Location: Scaffold_7191__1_contigs__length_25400:21148...21911
NR annotation: XP_004029652.1, polymerase i polypeptide 30kda, putative [Ichthyophthirius multifiliis]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54SN4	DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum OX=44689 GN=polr1c PE=3 SV=1
Q32L22	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1
P52432	DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004668 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01193 all species →	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036643 all species →	Homologous_superfamily	DNA-directed RNA polymerase, insert domain superfamily	Interproscan
IPR036603 all species →	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR011263 all species →	Domain	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Interproscan
IPR050518 all species →	Family	Archaeal Rpo3/Eukaryotic RPB3 RNA Polymerase Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11800 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0001054 all species →	Molecular Function	RNA polymerase I activity	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0005736 all species →	Cellular Component	RNA polymerase I complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35585-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.