Detailed information of ANN35657-RA in Montipora grisea

Genomic Location: Scaffold_7319__1_contigs__length_25090:9036...11253
NR annotation: QTD49177.1, tRNA 2-thiouridine(34) synthase MnmA [Sulfidibacter corallicola]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q48H61tRNA-specific 2-thiouridylase MnmA OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=mnmA PE=3 SV=1
Q4ZRK0tRNA-specific 2-thiouridylase MnmA OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=mnmA PE=3 SV=1
A6V4G0tRNA-specific 2-thiouridylase MnmA OS=Pseudomonas paraeruginosa (strain DSM 24068 / PA7) OX=381754 GN=mnmA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0015317 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02574
all species →		S-methyl_transHomocysteine S-methyltransferaseFamilyInterproscan
PF20259
all species →		tRNA_Me_trans_MtRNA methyl transferase PRC-barrel domainDomainInterproscan
PF20258
all species →		tRNA_Me_trans_CAminomethyltransferase beta-barrel domainDomainInterproscan
PF03054
all species →		tRNA_Me_transtRNA methyl transferase HUP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003726
all species →		DomainHomocysteine-binding domainInterproscan
IPR046884
all species →		DomaintRNA-specific 2-thiouridylase MnmA-like, central domainInterproscan
IPR023382
all species →		Homologous_superfamilytRNA-specific 2-thiouridylase MnmA-like, central domain superfamilyInterproscan
IPR046885
all species →		DomaintRNA-specific 2-thiouridylase MnmA-like, C-terminal domainInterproscan
IPR036589
all species →		Homologous_superfamilyHomocysteine-binding domain superfamilyInterproscan
IPR004506
all species →		FamilytRNA-specific 2-thiouridylaseInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11933
all species →		TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016783
all species →		Molecular Functionsulfurtransferase activityInterproscan
GO:0002143
all species →		Biological ProcesstRNA wobble position uridine thiolationInterproscan
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0016740
all species →		Molecular Functiontransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN35657-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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