Gene detail

Detailed information of ANN35707-RA in Leptoseris scabra

Genomic Location: Scaffold_972__1_contigs__length_31139:7155...10322
NR annotation: WP_281715562.1, response regulator [Alteromonas sp. CyTr2]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35707-RA

ATGGCGCTTCCTACTTTTGCGCTTTTAAAAGAACCACTTAACACCACATCATCAGTCACTACGCTAGACGAACTGAAGCAGCGAATTCAAAACAATGATGAGTCTGTAGAAACCACATTCACCGAGCTAGGCTATTTCTTCGACGCCCACCCGAACGCTTTTCAGCAAGCCCGTTTATTCAATCTAAGAGCTTATAAGCACATTCTTGAGCAAGACCTTGTCGCCGGATACGAAACTCTGTTGGAAGCCCGCAAGCTTGCAAAAAAAGGCGGCAACACCATGGCGCTGGCAGAATCTTTTCGCTTAGAAGGGCTTATTTTGGACTTGTCTGGTGAGCATGCTCGTGCACTTGAAGCGCTCAACAAATCCCTTGCTGCTTTCATTGAAGTAAATAGCGATAACGCCTTGCTTGTATATAGCGCTATGGGCAATGTGTACATGTCGCTGCAAAACTACGAAATGATGTTGCAGCTAGGTCAAAACTTCCTCGCCGCAGCCCAGCGTTTAAATGATAAAGAAAACAAAGCCATTGCTTACTTTTTCCAAGGTTACGCGCAAACGGAACTGGGGGACTATCAAGACGCTAAAATAAGCCTTCTGCTGGCAGAAGAATTGTTCAAAGAGGTGCACTATCCCTTTATTGGCATTGTTCATACCAAAATGGCTGAGCTACATATCGCCCAAGGCAATTTAACTGAAGCGCTGACCATGTTGAACCGCGCTGCGGAATCAGACCGCAAAGTTGGTTTTAAGTACAACGAAGGGTCTAGACTACTGCGCTTAGTCGACATCTACATTAAACGCAATCAAATAGACTTGGCTATTAGCGAACTTGAAGGTGGATTAAAAAAAGACGCCATAAAGAACGACAAATCAGTGGTGCTAAGCATGTTGGAAAAGCTCATTTCACTCCTTGAATCAACCAACAATTTTGAAGCCGCGTTAGAATATTCAAAGCTATACACGAAAACTTATGAAGAAAGTTTTAATGAACAGCAATCAAGGTTGTTAGCCCTTAACCGCGTGCGACTTTCTATTTCCGAAAAAGAAGAAACCATCAAGCTTCTAGAGAAAGACAACCAGCTAAAAGAGCAGCGTAACCTTATACAGAAAAAGCAAAACACGTTTCAGCTGTATTTCATCGGTTTTGTGATCCTTTCATTAGGCTTAGTCGTTGGCCTATGGCTTAGAACTCGCCAACAACGTAAGGCGCTTGATGCACTTACTCAAGACCTTCAGAAAGCAACAAAAGCAAAATCTGACTTTCTTGCACGCATGAGTCACGAAATTCGCACGCCGCTTAACGCCATTATCGGCCTGACCAAGCTTTCACAGCGGGCTGCAGAAGATAAAGATCAACAAACGAACCTTATTCAGATTGAAGGCGCGTCGCAAACCCTACTAAGCATAATTAACGACATACTCGACTTCTCGAAAATAGAAGCGGGCAAGCTTGATATTGAATCGACGCAATTCAATTTAGACGCGCTAGTAAACCAAACCATTAGATTGCATTTAGGGCGCGCTGAGGAAAAGCACATAGAGCTTATTCAGCATATATCACGTGACGTACCGTTAAACCTCATCGGCGACCCGTTACGCATACAGCAAATTCTAAGCAATTTAGTTAGCAACGCTCTTAAGTTTACCGAGGATGGACTGATTTCGGTAAGCGTTAGATGCACGCATAATGTAGAAGACATTCAGCTTGAATTTGAAGTTAAAGACACAGGGATTGGGCTAAACAGCACGCAAAAGGCTTTGCTATTTCAACCATTTAACCAAGGTGATGAGTCTATATCTCGTCGATACGGCGGCACCGGCCTAGGATTAGCAATATGTAAGCAGTTAGTCACATTAATGGGCGGAGAGATTTGGGTTGAGAGCCAGCTTGGAAAAGGCGCAAGCTTTCATTTTACCGTAACCGTTAAACAGGATGCTTCCCAACAAATTGTATCGCCGTCTAAGCAACTTTCGTTACTTAAGGTGCTTATTGCTGATGACATTGGCGTGTCGCGTGACGCTATTATCGAGTCGCTATCAGTGGCTAACATTAAAGCAGATGTTGCGACCGGCGGTAAAGAAGCCGTAGCCAAAATGCGTGCTGCTGTGGGAAACAGTGCGCCTTACGACGTACTTATTTTAGATTGGAATATGCCTGACATTGATGGATTGGAAGTTGCAGCCATCATGAAACAGGAGTTTTCAATTAAGCCACCGAAGGTGATAATGCTGTATGCATTCGAGTCGCCTCATATGCGAGAGCAGGCTAACCAACTAGGTATTCGAACCTTCATTAAAAAGCCTTTTAGCACTAGTGAGCTTGTAGATAAGCTACAAGAGCTTTGCTTAAACGTGAACACAAGAACCCTACCAGCAGATGCTGCGCCTGTGCCCAATCTGCGCGGAACGAAGATCCTTTTCGCAGAAGACAATACGCTGAATCAAAAAGTAACCCTTGGTCTGTTAAACGACACCCACGCGAATATTGAAGTGGTTAGCAACGGCTTTGAAGCCATAAAAGCCTTACGTGAAGATAACAGCTATGACGTGGTATTGATGGATATTCAAATGCCCGTTATGGACGGGTTAACAGCAGCTAAAAAAATAAGAGATGAGCTGAAATTAACTTTGCCGATTATTGCCATGACGGCTCACGCCATGCAGCAAGACATTGACAAGAGCCTGGCAGCGGGCATGGACGGCCACATCAACAAACCGGTTGACCCAAATCGCTTCTTTGACGTGCTTGTTGAAGTGCTAAATAAAGGAAAGTCGACTGCGACCACTGAAGTAACCGGCGGGCCATCGGCAAACACAATACCGCTGAGCTTTATAGATAAATCTCAAGCCATGCAAGCAATGTTAAATGACGAGACTTTGTATAAAGAGTTACTTAACGACTTTGCAGCACTTAACAAAGAGCTAGATAACCTTCGAAAAGCCATTGATGAAAAAGACTATGCTTCTATTGTTCGTATAGCGCATATCTACATAACTGCCCTTCGGTACATTGGCGCTTACGCCTTAGCTGAGCTAGCTGCAACGATTGAGCTAACGATAAAAGGTAATGAGCATGGAAGCGTAGCTGGTTTTAGCGATCAGTTAGAAGCACTTTACACAGCATTGGTAGAGATGAATGCGAAAGTTGAGGGAATGGTGAAGTAA

Transcript

ANN35707-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48027	Sensor protein GacS OS=Pseudomonas syringae pv. syringae OX=321 GN=gacS PE=3 SV=1
Q5A599	Histidine protein kinase NIK1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=NIK1 PE=1 SV=3
Q54YZ9	Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum OX=44689 GN=dhkJ PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006816 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan
PF01627 all species →	Hpt	Hpt domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR036641 all species →	Homologous_superfamily	HPT domain superfamily	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan
IPR008207 all species →	Domain	Signal transduction histidine kinase, phosphotransfer (Hpt) domain	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45339 all species →	HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11527	K11527; two-component system, sensor histidine kinase and response regulator	EC:2.7.13.3	Two-component system	ko02022	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.