Genomic Location: Scaffold_440__1_contigs__length_96271:91607...93074
NR annotation: RKU08678.1, dehydrogenase [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN35792-RA |
| Transcript |
| ANN35792-RA |
| Protein |
| ANN35792-RA |
| UniProt accession | Description |
|---|---|
| Q0QLF4 | Nicotinate dehydrogenase FAD-subunit OS=Eubacterium barkeri OX=1528 GN=ndhF PE=1 SV=1 |
| Q6AUV1 | Xanthine dehydrogenase OS=Oryza sativa subsp. japonica OX=39947 GN=XDH PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0062370 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03450 all species → | CO_deh_flav_C | CO dehydrogenase flavoprotein C-terminal domain | Domain | Interproscan |
| PF00941 all species → | FAD_binding_5 | FAD binding domain in molybdopterin dehydrogenase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051312 all species → | Family | Diverse Substrate Oxidoreductases | Interproscan |
| IPR005107 all species → | Domain | CO dehydrogenase flavoprotein, C-terminal | Interproscan |
| IPR016166 all species → | Domain | FAD-binding domain, PCMH-type | Interproscan |
| IPR002346 all species → | Domain | Molybdopterin dehydrogenase, FAD-binding | Interproscan |
| IPR036683 all species → | Homologous_superfamily | CO dehydrogenase flavoprotein, C-terminal domain superfamily | Interproscan |
| IPR016169 all species → | Homologous_superfamily | FAD-binding, type PCMH, subdomain 2 | Interproscan |
| IPR036318 all species → | Homologous_superfamily | FAD-binding, type PCMH-like superfamily | Interproscan |
| IPR016167 all species → | Homologous_superfamily | FAD-binding, type PCMH, subdomain 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42659 all species → | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0071949 all species → | Molecular Function | FAD binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0050660 all species → | Molecular Function | flavin adenine dinucleotide binding | Interproscan |
ANN35792-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
