Genomic Location: Scaffold_6169__1_contigs__length_27634:17888...19630
NR annotation: MBI3304099.1, NADH-quinone oxidoreductase subunit D [Deltaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN35802-RA |
| Transcript |
| ANN35802-RA |
| Protein |
| ANN35802-RA |
| UniProt accession | Description |
|---|---|
| Q6MIR5 | NADH-quinone oxidoreductase subunit C/D OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100) OX=264462 GN=nuoC PE=3 SV=1 |
| A9GUZ1 | NADH-quinone oxidoreductase subunit D 1 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=nuoD1 PE=3 SV=1 |
| A8ERL4 | NADH-quinone oxidoreductase subunit C/D OS=Aliarcobacter butzleri (strain RM4018) OX=367737 GN=nuoC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002316 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00329 all species → | Complex1_30kDa | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | Family | Interproscan |
| PF00346 all species → | Complex1_49kDa | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022885 all species → | Family | NAD(P)H-quinone oxidoreductase subunit D/H | Interproscan |
| IPR026662 all species → | Family | NADH-quinone oxidoreductase subunit CD | Interproscan |
| IPR010218 all species → | Family | NADH dehydrogenase, subunit C | Interproscan |
| IPR037232 all species → | Homologous_superfamily | NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily | Interproscan |
| IPR001268 all species → | Domain | NADH:ubiquinone oxidoreductase, 30kDa subunit | Interproscan |
| IPR001135 all species → | Domain | NADH-quinone oxidoreductase, subunit D | Interproscan |
| IPR014029 all species → | Conserved_site | NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site | Interproscan |
| IPR029014 all species → | Homologous_superfamily | [NiFe]-hydrogenase, large subunit | Interproscan |
| IPR020396 all species → | Conserved_site | NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11993 all species → | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016651 all species → | Molecular Function | oxidoreductase activity, acting on NAD(P)H | Interproscan |
| GO:0030964 all species → | Cellular Component | NADH dehydrogenase complex | Interproscan |
| GO:0050136 all species → | Molecular Function | NADH:ubiquinone reductase (non-electrogenic) activity | Interproscan |
| GO:0008137 all species → | Molecular Function | NADH dehydrogenase (ubiquinone) activity | Interproscan |
| GO:0048038 all species → | Molecular Function | quinone binding | Interproscan |
| GO:0051287 all species → | Molecular Function | NAD binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13378 | nuoCD; NADH-quinone oxidoreductase subunit C/D | EC:7.1.1.2 | Oxidative phosphorylation | ko00190 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
