Gene detail

Detailed information of ANN35902-RA in Montipora grisea

Genomic Location: Scaffold_1182__1_contigs__length_59995:13821...15780
NR annotation: GFR72312.1, ATP-dependent Clp protease ATP-binding subunit ClpX [Elysia marginata]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8A128	ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=clpX PE=3 SV=1
Q5L8L7	ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=clpX PE=3 SV=1
Q64NW3	ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=clpX PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004342 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06689 all species →	zf-C4_ClpX	ClpX C4-type zinc finger	Domain	Interproscan
PF07724 all species →	AAA_2	AAA domain (Cdc48 subfamily)	Domain	Interproscan
PF00574 all species →	CLP_protease	Clp protease	Domain	Interproscan
PF10431 all species →	ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038366 all species →	Homologous_superfamily	Zinc finger, ClpX C4-type superfamily	Interproscan
IPR001907 all species →	Family	ATP-dependent Clp protease proteolytic subunit	Interproscan
IPR019489 all species →	Domain	Clp ATPase, C-terminal	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR033135 all species →	Active_site	ClpP, histidine active site	Interproscan
IPR025662 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR010603 all species →	Domain	Zinc finger, ClpX C4-type	Interproscan
IPR004487 all species →	Family	Clp protease, ATP-binding subunit ClpX	Interproscan
IPR046425 all species →	Family	Clp protease, ATP-binding subunit ClpX, bacteria	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR050052 all species →	Family	ATP-dependent Clp protease ATP-binding subunit ClpX	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR023562 all species →	Family	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48102 all species →	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0009376 all species →	Cellular Component	HslUV protease complex	Interproscan
GO:0051301 all species →	Biological Process	cell division	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35902-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.