Gene detail

Detailed information of ANN35948-RA in Montipora grisea

Genomic Location: Scaffold_9044__1_contigs__length_20804:4704...7155
NR annotation: WP_166162356.1, 30S ribosomal protein S1 [Pseudomaricurvus alcaniphilus]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35948-RA

ATGAGCGAATCTTTCGCAGAACTCTTTGAAGAAAGTTTAAAAACCGTTGATATGGTTCCCGGTTCCATCGTCACTGGTGTGGTGATCGATGTTGATAAAGATTGGGTAACTGTTCACGCGGGTCTGAAGTCTGAGGGTGTTATCCCCGCTTCCCAGTTTCTTAACGACAGCGGTGAGCTGAACCTCAGCATTGGTGATGAAGTTCAGGTAGCGCTGGAGTCCGTTGAAGATGGATTTGGTGAAACCCGCCTGTCCCGTGAAAAAGCCAAGCGCGCCGAAGCCTGGAAAGTGCTTGAAGCTGCTCACGAAGCCGACGAAGTGGTTAAAGGTGTTATCAATGGCAAGGTTAAAGGTGGTTTCACCGTTGACGTTGCTGGTATTCGTGCGTTCTTGCCAGGTTCTCTGGTCGATGTTCGCCCAGTGCGCGAAACCGCTCACCTGGAAGGCAAAGAGCTCGAGTTCAAAGTCATCAAGCTCGACCAAAAGCGTAACAACGTTGTCGTTTCTCGCCGTGCCGTGATGGAAAAAGCCAACTCTGCAGAGCGTGAAGAGCTGTTGGCCAACCTGCAAGAAGGTATGAGCATTAAGGGTATCGTTAAGAACCTGACCGACTACGGCGCGTTCGTAGATCTGGGCGGTGTTGACGGCCTGTTGCACATCACTGATATGGCTTGGAAGCGTATCAAGCACCCAAGCGAGATCGTCAACGTAGGTGACGAAATCGACGTTAAAGTGCTGAAGTTTGATCGTGAGCGCAACCGCGTTTCTCTGGGTCTGAAGCAACTGGGTGAAGATCCATGGGTCGAAATCACCAACCGCTACCCAGAAGGTGCTCGCACCACGGCGCGCGTAACCAACCTGACCGATTACGGCTGTTTTGCTGAGATCGAAGAGGGTGTTGAAGGTCTGGTTCACGTATCCGAAATGGATTGGACCAACAAAAACATTCACCCATCCAAAGTGGTCAATGTTGGCGACGAAGTCGAGGTGATGATTCTCGACATCGACGAAGAGCGTCGTCGTATTTCTCTGGGTATCAAGCAGTGTCAAGAAAACCCATGGGATGCGTTTGGCAAGCAGTTCGCTAAAGGTGACAAAATCTCCGGTAAGATCAAGTCAATCACTGACTTCGGTATCTTCATCGGCTTGGATGGCGGCATCGACGGTTTGGTTCACTTGTCTGACATTTCTTGGCAGGAAGCGGGCGAAGAAGCCGTTCGCAAGTACAAGAAAGGTGATGAGATGGAGACCGTTATTCTGGCCATCGATCCAGAGCGCGAGCGCATCTCTTTGGGTATCAAGCAGCTCGACAGCGACCCATTCTCAGACTACATCGCTGAGAACGACAAAGGCGCTATCGTGACCGGTACCGTGAAAGAAGTGGATGCCAAAGGTGCTGTTATCACTCTGGCTGACGACGTCGAGGCGGTATTGAAGGCCTCTGAAATCAGCCGCGATAAAGTGGAAGATGCGCGCAATGCGTTGAACGTTGGTGACAGTGTTGAAGCTGTCATCCTGAACGTTGATCGTAAGAACCGCGGTATCAACCTGTCGGTGAAATCGAAAGACGCTGCTGAAGAGCGTGCTGCAATTAAAGAGCACTCTAATAAAGCAGCTGAGCAAGCGCAACCTGCTACCATTGGTGACCTGATTAAGGCGCAAATGGAAAGCCAGGACAACCCGATCTCCCGCGTTGTGAAGATCAAAGGAAGGGTTATGACCAAGTCGGAATTGATAGAGCGGATTGCTGATCAGCAGGATCAGTTGTCGGTGAAAGATGTTGAGCTGGCGGTAAAGCTCATGCTGGATCACATGTCTCAGCGGCTCTCAACGGGCGAGCGTATTGAGATCAGGGGGTTTGGCAGTTTCTCCTTGCACTACCGGGCGCCTCGTGTAGGCCGCAACCCAAAAACGGGTGATTCTGTTGAGTTGACGGGTAAGTACGTTCCGCATTTCAAGCCGGGAAAAGAGCTGAGAGATCGAGTTAACGAGACTCTTGATGACTAA

Transcript

ANN35948-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HZ71	Small ribosomal subunit protein bS1 OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rpsA PE=3 SV=1
P0AG69	Small ribosomal subunit protein bS1 OS=Escherichia coli O157:H7 OX=83334 GN=rpsA PE=3 SV=1
P0AG68	Small ribosomal subunit protein bS1 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rpsA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012568 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00216 all species →	Bac_DNA_binding	Bacterial DNA-binding protein	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR010992 all species →	Homologous_superfamily	Integration host factor (IHF)-like DNA-binding domain superfamily	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR000119 all species →	Family	Histone-like DNA-binding protein	Interproscan
IPR005685 all species →	Family	Integration host factor, beta subunit	Interproscan
IPR020816 all species →	Conserved_site	Histone-like DNA-binding protein, conserved site	Interproscan
IPR050437 all species →	Family	Bacterial ribosomal protein bS1	Interproscan
IPR000110 all species →	Family	Small ribosomal subunit protein bS1	Interproscan
IPR035104 all species →	Family	Ribosomal protein S1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10724 all species →	30S RIBOSOMAL PROTEIN S1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02945	RP-S1, rpsA; small subunit ribosomal protein S1	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.