Genomic Location: Scaffold_6856__1_contigs__length_26140:19717...21020
NR annotation: MBU27328.1, S-methyl-5'-thioadenosine phosphorylase [Nitrososphaerota archaeon]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN35962-RA |
| Transcript |
| ANN35962-RA |
| Protein |
| ANN35962-RA |
| UniProt accession | Description |
|---|---|
| A9A3N5 | S-methyl-5'-thioadenosine phosphorylase OS=Nitrosopumilus maritimus (strain SCM1) OX=436308 GN=mtnP PE=3 SV=1 |
| A0RVQ7 | S-methyl-5'-thioadenosine phosphorylase OS=Cenarchaeum symbiosum (strain A) OX=414004 GN=mtnP PE=3 SV=1 |
| A9A3N4 | Adenine phosphoribosyltransferase OS=Nitrosopumilus maritimus (strain SCM1) OX=436308 GN=apt PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005312 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01048 all species → | PNP_UDP_1 | Phosphorylase superfamily | Domain | Interproscan |
| PF00156 all species → | Pribosyltran | Phosphoribosyl transferase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018099 all species → | Conserved_site | Purine phosphorylase, family 2, conserved site | Interproscan |
| IPR029057 all species → | Homologous_superfamily | Phosphoribosyltransferase-like | Interproscan |
| IPR005764 all species → | Family | Adenine phosphoribosyl transferase | Interproscan |
| IPR010044 all species → | Family | Methylthioadenosine phosphorylase (MTAP) | Interproscan |
| IPR035994 all species → | Homologous_superfamily | Nucleoside phosphorylase superfamily | Interproscan |
| IPR000845 all species → | Domain | Nucleoside phosphorylase domain | Interproscan |
| IPR000836 all species → | Domain | Phosphoribosyltransferase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42679 all species → | S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016763 all species → | Molecular Function | pentosyltransferase activity | Interproscan |
| GO:0003999 all species → | Molecular Function | adenine phosphoribosyltransferase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006168 all species → | Biological Process | adenine salvage | Interproscan |
| GO:0017061 all species → | Molecular Function | S-methyl-5-thioadenosine phosphorylase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0019509 all species → | Biological Process | L-methionine salvage from methylthioadenosine | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0009116 all species → | Biological Process | nucleoside metabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01703 | leuC, IPMI-L; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit | EC:4.2.1.33 EC:4.2.1.35 | Glucosinolate biosynthesis | ko00966 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
