Gene detail

Detailed information of ANN36012-RA in Montipora grisea

Genomic Location: Scaffold_3160__1_contigs__length_37909:1554...3014
NR annotation: WP_237379736.1, sigma-54 dependent transcriptional regulator [Sulfidibacter corallicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P29267	Hydrogenase transcriptional regulatory protein HoxA OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=hoxA PE=3 SV=2
B5F363	Anaerobic nitric oxide reductase transcription regulator NorR OS=Salmonella agona (strain SL483) OX=454166 GN=norR PE=3 SV=1
B5FSZ0	Anaerobic nitric oxide reductase transcription regulator NorR OS=Salmonella dublin (strain CT_02021853) OX=439851 GN=norR PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00158	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF02954	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002078	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR025662	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025944	Conserved_site	Sigma-54 interaction domain, conserved site	Interproscan
IPR002197	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan