Gene detail

Detailed information of ANN36144-RA in Montipora grisea

Genomic Location: Scaffold_6607__1_contigs__length_26617:5113...9626
NR annotation: MCS5546293.1, redox-regulated ATPase YchF [SAR324 cluster bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0ABU3	Ribosome-binding ATPase YchF OS=Escherichia coli O157:H7 OX=83334 GN=ychF PE=3 SV=2
P0ABU2	Ribosome-binding ATPase YchF OS=Escherichia coli (strain K12) OX=83333 GN=ychF PE=1 SV=2
P0ABU4	Ribosome-binding ATPase YchF OS=Shigella flexneri OX=623 GN=ychF PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003576 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01386 all species →	Ribosomal_L25p	Ribosomal L25p family	Domain	Interproscan
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF03796 all species →	DnaB_C	DnaB-like helicase C terminal domain	Domain	Interproscan
PF06071 all species →	YchF-GTPase_C	Protein of unknown function (DUF933)	Domain	Interproscan
PF01250 all species →	Ribosomal_S6	Ribosomal protein S6	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035980 all species →	Homologous_superfamily	Small ribosomal subunit protein bS6 superfamily	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR023192 all species →	Homologous_superfamily	TGS-like domain superfamily	Interproscan
IPR029751 all species →	Domain	Large ribosomal subunit protein bL25, L25 domain	Interproscan
IPR012676 all species →	Homologous_superfamily	TGS-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031167 all species →	Domain	OBG-type guanine nucleotide-binding (G) domain	Interproscan
IPR011035 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	Interproscan
IPR007694 all species →	Domain	DNA helicase, DnaB-like, C-terminal	Interproscan
IPR014717 all species →	Homologous_superfamily	Translation elongation factor EF1B/small ribosomal subunit protein bS6	Interproscan
IPR013029 all species →	Domain	YchF, C-terminal domain	Interproscan
IPR000529 all species →	Family	Small ribosomal subunit protein bS6	Interproscan
IPR020056 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR041706 all species →	Domain	YchF, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23305 all species →	OBG GTPASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN36144-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.