Gene detail

Detailed information of ANN36150-RA in Montipora grisea

Genomic Location: Scaffold_4171__1_contigs__length_33135:5020...7511
NR annotation: MBG6208247.1, choline dehydrogenase [Labrenzia sp. EL_126]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN36150-RA

ATGCAGTCCGCATCTCGGAATGCTTCAACAAAATTGGTGACGCTCGAGCGCGGGATGCACCTCCTAAGGGCGTTCCAAACCAATGATGATGGTCTGAGCAATGCTGAACTGTCGGCACGTACCGGCATTCCCAAATCTGCGGTATCAAGGCTCACTCAAACGCTTATAGAATTAGGTTTTCTCATTCACGCGGGACGCAAGAGTAAGTTCCGCCCAGGCCCTGGATTGCTTGCGCTGGGGCGCGTTGCGAACGACACTCTGCCTTTTGTTCGAAACTCCCGCGCGGCGCATCAGCAAATGGCTGATGAAACAAATGTTCAAGTCATCATGACCGTTCGCGAAGGCGCTTACTTGATGTTGGTGAGCGCACGGTTGCCGCAGAACGGCTCCAGTCCGTTTTATGATGTCGGGCACCGCGTTCCCATATTCGGTTCGGGCGCAGGTCTTTGCTATTTAGCGGCTCTCTCATCACCGCAGCTTTCGGCGCTCATTCCAGTTCTAAGTGAAACCTACGATTTCAGTGAGATTGAGATCTATAGGCGCGTCAACGAAGCGCGAAGCGCTCTCATAGAGAACGGTTTCTATCAGCCGCCAGTGGATACGTATTTCAATCCAGACATGCGCGCTGTCGCGCTTCCAATGCGCTCTCGTAATCTCGGTGAGCCTGTCATTCTCTCAGCTGTGGTGGGCCGGCAAGCGAAGACTGAGTTAAGAATGGAAGTGATCCAAACAGACTATGTTATTGCCGGGGCAGGATCGGCCGGTTGCGTACTTGCAAATAAGCTCAGCGAGGACCCGAGGAATCAAGTCATTCTGTTAGAAGCGGGCGGCAAGGATAGAAGTCCATGGGTGCATATTCCTGTTGGATTTTACCAGCTGGCCACAAAGGCCTGCCCTGAAAACTGGGCATACGAAACAGCCCCAGATCCGGGCCTGAATGGCCGGTCAATTCCTTGGCCGCGCGGGCGTATGCTGGGGGGCTCCTCCTCGCTGAATGGTCTCCTTTATGTGCGCGGTCAGCCGGAAGATTATGATCACTGGCGCCAATTAGGAAATGCAGGGTGGGATTGGGCATCTGTTCGCCCACACTTTGAAGCGTTAGAAGACAGCCAGGGCGAAGACGAGCGGAGCCTCTCCTCGGGCGGCCCGCTCCGAATTTCTGAGCAGCGATTCGAGCACCCCATCGTCGAAGATTGGATTAATGCTGCAATAGATAAAGGGTTCCCGCATAATGAAGACTATAATGGCCCAGTTCAGGAAGGCGTTGCGCACTTTAAATTGACAACGCGCAATGGCTGGCGGGAAAGCGCTGCAACCGCATTTCTGCGCCCAGCCAAAAAACGAAAAAATCTGAAAATTATCACCCACGCTATGGTGCAGAAAGTCAATTTGGACGGGCAACGCTGCACAGGTCTCACTTACAAGGATCGCTCAGGCAAGCTGGTGGAAGTTAAGGCGGGCCGTGAGACAGTCATTGCGGGTGGGTCTATCGGCTCTCCGCAAATTCTATTGCTCTCAGGGATTGGTAACGCAGAACATTTGCGCGATGTTGGTGTCGAGGTGAAGCACAATTTGCGCGGCGTGGGTGAAGGCCTTCAGGACCATCTACACCACAAGATGGTATTCAAAACCCGTAAGCCTACGCTGAATCAGGAGCTGAATTCAGTCCTAAGGCAAGCCAGAAGCGCTATGCGATTTGCTCTTAACCGTACCGGATCACTTGCGATGCCAGCGGCCATGGCGAACGGCTTTTTTAAGACAAGGCCAGAGGTCGCCACACCCGATATTCAGTTTTTGATTCAGCCTCTATCGACTGTTGATAATGAGCCTGAGGATTTTCCCGCCTTTACAATGAACTTCTGCCAGTCTCGACCCGAAAGCCGAGGTTACATTCGATTAGCGAGTGCGAATGCCGAGGATTATCCCATTATCCAACCCAATTATCTGTCCACGGAAACAGACTGCGCGTGTGTCATGGAAGGGTTCCGAATTGGGCGGCTAATCGCAACGGGTGAGCCGCTGGCGTCAAATATTGTTGAAGAGGTGCGCCCTGGCCCAAGCCTGCAATCCGGTTCGGATGAGCTAATGGATTGGGCACGATCAAATGCGGCAACTATCTTTCACCCGTCAGGTACTTGCGCGATGGGAACAAGCGATCGCGCGGTCGTTACACCGGAACTGAAAGTCCATGGCCTGGAAAGATTACGGGTCGCTGATTGCTCAATCATGCCCGAACTTGTGTCCGGAAACACCAATGCCGCCACGATGATGATCGCTTCGAAGGCAAGCGACATGATCCTTAATAGTCAACGCGCATAG

Transcript

ANN36150-RA

Protein

Uniprot

Uniprot term	Description
Q8NE62	Choline dehydrogenase, mitochondrial OS=Homo sapiens OX=9606 GN=CHDH PE=1 SV=2
Q9WWW2	Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida OX=303 GN=alkJ PE=3 SV=1
Q8BJ64	Choline dehydrogenase, mitochondrial OS=Mus musculus OX=10090 GN=Chdh PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09339	HTH_IclR	IclR helix-turn-helix domain	Domain	Interproscan
PF00732	GMC_oxred_N	GMC oxidoreductase	Domain	Interproscan
PF05199	GMC_oxred_C	GMC oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR005471	Domain	Transcription regulator IclR, N-terminal	Interproscan
IPR000172	Domain	Glucose-methanol-choline oxidoreductase, N-terminal	Interproscan
IPR029016	Homologous_superfamily	GAF-like domain superfamily	Interproscan
IPR012132	Family	Glucose-methanol-choline oxidoreductase	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR007867	Domain	Glucose-methanol-choline oxidoreductase, C-terminal	Interproscan
IPR014757	Domain	Transcription regulator IclR, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11552	GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016614	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan