Gene detail

Detailed information of ANN36353-RA in Montipora grisea

Genomic Location: Scaffold_4641__1_contigs__length_31650:14336...15616
NR annotation: MCG8423952.1, tyrosine--tRNA ligase [Pseudomonadota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7NK64	Tyrosine--tRNA ligase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) OX=383372 GN=tyrS PE=3 SV=1
A5UUZ9	Tyrosine--tRNA ligase OS=Roseiflexus sp. (strain RS-1) OX=357808 GN=tyrS PE=3 SV=1
Q5LJ19	Tyrosine--tRNA ligase OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / LMG 10263 / NCTC 9343 / Onslow / VPI 2553 / EN-2) OX=272559 GN=tyrS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0015284 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF01479 all species →	S4	S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024088 all species →	Family	Tyrosine-tRNA ligase, bacterial-type	Interproscan
IPR002307 all species →	Family	Tyrosine-tRNA ligase	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR024107 all species →	Family	Tyrosine-tRNA ligase, bacterial-type, type 1	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11766 all species →	TYROSYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004831 all species →	Molecular Function	tyrosine-tRNA ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006437 all species →	Biological Process	tyrosyl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01866	YARS, tyrS; tyrosyl-tRNA synthetase	EC:6.1.1.1	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.