Genomic Location: Scaffold_2393__1_contigs__length_43123:32651...35242
NR annotation: MCE2457910.1, DNA gyrase subunit A [Dehalococcoidia bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN36366-RA |
| Transcript |
| ANN36366-RA |
| Protein |
| ANN36366-RA |
| UniProt accession | Description |
|---|---|
| D8K235 | DNA gyrase subunit A OS=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) OX=552811 GN=gyrA PE=3 SV=1 |
| P0C0R0 | DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=gyrA PE=3 SV=1 |
| Q5HK04 | DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=gyrA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010946 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03989 all species → | DNA_gyraseA_C | DNA gyrase C-terminal domain, beta-propeller | Repeat | Interproscan |
| PF00521 all species → | DNA_topoisoIV | DNA gyrase/topoisomerase IV, subunit A | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002205 all species → | Domain | DNA topoisomerase, type IIA, domain A | Interproscan |
| IPR013757 all species → | Homologous_superfamily | DNA topoisomerase, type IIA, alpha-helical domain superfamily | Interproscan |
| IPR035516 all species → | Homologous_superfamily | DNA gyrase/topoisomerase IV, subunit A, C-terminal | Interproscan |
| IPR006691 all species → | Repeat | DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat | Interproscan |
| IPR050220 all species → | Family | Type II DNA Topoisomerases | Interproscan |
| IPR013760 all species → | Homologous_superfamily | DNA topoisomerase, type IIA-like domain superfamily | Interproscan |
| IPR013758 all species → | Homologous_superfamily | DNA topoisomerase, type IIA, domain A, alpha-beta | Interproscan |
| IPR005743 all species → | Family | DNA gyrase, subunit A | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43493 all species → | DNA GYRASE/TOPOISOMERASE SUBUNIT A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003918 all species → | Molecular Function | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006265 all species → | Biological Process | DNA topological change | Interproscan |
| GO:0003916 all species → | Molecular Function | DNA topoisomerase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0009330 all species → | Cellular Component | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex | Interproscan |
| GO:0006259 all species → | Biological Process | DNA metabolic process | Interproscan |
| GO:0005694 all species → | Cellular Component | chromosome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02469 | gyrA; DNA gyrase subunit A | EC:5.6.2.2 | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
