Gene detail

Detailed information of ANN36544-RA in Montipora grisea

Genomic Location: Scaffold_5747__1_contigs__length_28663:25902...27239
NR annotation: WP_142897420.1, sigma-54 dependent transcriptional regulator [Denitrobaculum tricleocarpae]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q04849	Nitrogen assimilation regulatory protein NtrX OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=ntrX PE=3 SV=1
Q68WH4	Putative response regulator NtrX-like OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=RT0550 PE=3 SV=1
Q4UL27	Putative response regulator NtrX-like OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=RF_0895 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0018259 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02954 all species →	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan
PF00158 all species →	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025944 all species →	Conserved_site	Sigma-54 interaction domain, conserved site	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002197 all species →	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR002078 all species →	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR025943 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071 all species →	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13599	ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX	-	Two-component system	ko02022	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.