Genomic Location: Scaffold_4587__1_contigs__length_31798:258...1874
NR annotation: RMH41395.1, transcription termination/antitermination protein NusA [Alphaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN36612-RA |
| Transcript |
| ANN36612-RA |
| Protein |
| ANN36612-RA |
| UniProt accession | Description |
|---|---|
| Q92HF4 | Transcription termination/antitermination protein NusA OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=nusA PE=3 SV=1 |
| Q9ZCZ7 | Transcription termination/antitermination protein NusA OS=Rickettsia prowazekii (strain Madrid E) OX=272947 GN=nusA PE=3 SV=1 |
| P37430 | Transcription termination/antitermination protein NusA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=nusA PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012710 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14520 all species → | HHH_5 | Helix-hairpin-helix domain | Domain | Interproscan |
| PF13184 all species → | KH_5 | NusA-like KH domain | Domain | Interproscan |
| PF08529 all species → | NusA_N | NusA N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015946 all species → | Homologous_superfamily | K homology domain-like, alpha/beta | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR010213 all species → | Domain | Transcription termination factor NusA | Interproscan |
| IPR030842 all species → | Family | Transcription termination/antitermination protein NusA, bacterial | Interproscan |
| IPR036555 all species → | Homologous_superfamily | NusA, N-terminal domain superfamily | Interproscan |
| IPR004087 all species → | Domain | K Homology domain | Interproscan |
| IPR009019 all species → | Homologous_superfamily | K homology domain superfamily, prokaryotic type | Interproscan |
| IPR003029 all species → | Domain | S1 domain | Interproscan |
| IPR010995 all species → | Homologous_superfamily | DNA repair Rad51/transcription factor NusA, alpha-helical | Interproscan |
| IPR025249 all species → | Domain | KH domain, NusA-like | Interproscan |
| IPR013735 all species → | Domain | Transcription factor NusA, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22648 all species → | TRANSCRIPTION TERMINATION FACTOR NUSA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0006353 all species → | Biological Process | DNA-templated transcription termination | Interproscan |
| GO:0031564 all species → | Biological Process | transcription antitermination | Interproscan |
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0031554 all species → | Biological Process | regulation of termination of DNA-templated transcription | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0000166 all species → | Molecular Function | nucleotide binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02600 | nusA; transcription termination/antitermination protein NusA | - | Ribosome biogenesis | ko03009 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
