Gene detail

Detailed information of ANN36643-RA in Montipora grisea

Genomic Location: Scaffold_5020__1_contigs__length_30522:27311...30431
NR annotation: KAG0184490.1, hypothetical protein DFQ28_011041 [Apophysomyces sp. BC1034]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN36643-RA

ATGAAAGCGATTATTCTTGCGGCCGGCATTGGTGCCCGGCTCGGTGAAATCTCCGGGGGTAAACCCAAGAGCCTGCTTATCTTTGATGGAAGCAGCCTGCTGAAACGCCACATTGAAAATCTAAGCCGGCTGGGTATCGACGAAGTACTCGTTGTAACCGGTTTCAAGAGCGACGATATTGAAGCTGAGCTTGCAAGCGTAGAGGATTCAGTTCAGTTAACGACGGCTTACAACCAGGACTACACGGCAGGCAGTGTCATTAGCCTGTACTGTGCCGCCCCTGCCCTGTGTTCCGGTGATGACGTGCTGCTGATGGATGCTGACGTGCTTTATCACCCGGATATCCTGTCGCGTCTTTATGACTCAAGTCATCCCAACTGCTTCTTGCTTGACCAGGATTTTGAGGCGGGAGATGAACCTGTAAAAATATGCGTGAGTGAAAATCACATGGTCGAATTCAGGAAGCGGGTGGATCAGTCACTGGTTCATGACTACCAGGGTGAGTCTGTGGGTTTTTTCAAATTCAGCAGCGAGGTTGGCAATGCACTGGCGGAGCGATGTAAAATTTACATCGATGAAGGCAGGACAGAAATCGCAGTGAATCGAAAGTTAAACAATAACAAGTCAAAGTGCCTGCAATTACGTGAGCTACTGAACTCAAACGAGCTGGAATTCATACTCGAAGCACATAACGGCCTGTCAGCCCGAATCGTAGAGGAAGCCGGTTTTGCCGGTATCTGGGGAAGTGGGCTGGCAATCTCCGCACAGTTTGGTGTGCGTGACAGTAACGAGGCAAGCTGGACCCAGGTGACTGAAATTCTCGAGTTCATGTCAGATGTGACCAGTATCCCGATACTGCTCGATGGTGATACGGGCTACGGCAACTTCAACAATATGCGTCGCCTCGTGCACAAGCTGGAACAGCGTGACATCGCGGGTGTTTGCATAGAAGACAAGCAGTTTCCAAAAACCAACAGCTTTATCGATGGTGAAAGACAACCACTGGCTGATATCGATGAATTCTGTGGCAAGATAAAAGCCGGCAAAGACAGCCAGTCTGACGATGACTTTTGTATCGTGGCCCGCGTTGAGGCGCTGATTGCCGGCTGGGATATGAAAGAGGCTCTAAAGCGCGCCGAGGCCTATCGTCTCGCCGGTGCGGATGCGATCCTTATTCATAGTAAGTTATCGCAGGCCGATGAAGTGCTGAATTTTGCAAAGGAATGGGATTCCCGGAGTCCGTTGGTCATCGTCCCGACAAAGTACTACAGCACGCCCACGGAAGTCTTTCGCAAGGCCGGCATTGACCTGGTGATCTGGGCTAACCACATGATTCGAGCGGCCGCGATTAGCATGGAAAATGTCAGCAGGGAAATATTTCAACAGGAATCCCTCGCCAATGTTGAAGACCAGATCGCATCAGTAAATCATATTTTTGAGTTACAGGGCGCCGAGGAGCTCTCTCTTGCCAGTTCAATTTACCTGAAACGTCGCGAGGAAAATAACGCCATAGTGCTGGCAGCAAGCCGTGGTAATGGCATGGATGAAGTCACCGAGGACAGGCCAAAAGTGATGATATCCATCGGTGGTAAAACCCTGCTAAGACGACTGGTCGACAAGTTTAAAAAACAGTCGATCAGCGATATTACCGTTGTCGCCGGATACAAGGCCGAGGCTATTGATATGCCCGGTATCAATATCCGTATCAACGAAAAACATGAAACCACCTCGGAGCTTACTTCACTGGCCTGCGCGCGGGAAAACTTCAACGACAACATGCTCATTATTTATGGTGACGTGCTGTTCCGAAGCTACATACTCAGTGACCTGCTGGATAGCCGGGCCGATATGGTTATCGTAGTAGATTCCATGCCGGTGACTTCAAGAATGAGCGGAGCCCCGGACTACACCTATTGCAACCTCGAAGACGATCGTTCGCTGTTTAAGCAGAAAGTCCTTGTTACCCACATGTCTGAACAGCTGGACCCTGACCGTGGCAAACCCAGCGGTAGATGGACCGGCATGCTGAAGGTCAACCACAATGGCAGGAAATGGATCGAGGAGGCACTGGATGTGTTACAGGAAGAGAGCAATTTCTCACAGCTCACCATGCCTGACCTCATCAACTACCTGGTGGAGCAGGGCAAAAACATTCACGTACATTATATTAACGGTCACTGGCTGGATGTGAATTCACTCGATGACATCGGTCGCGCCAGCGATGCCCTGGCCACGGCGGCAGGTCTCGCTGTCGCCGGTTCGCCCGCCATAGCAATGATGCAAAACTCCGGGCTTGGAAATGCCGTGAGCCCGCTGACTTCGCTTAACTGGGTTTTTCGTATACCTGTGCTAATCATTACAACACACAGGGGGGCACCGGGCCTGGCAGATGAACCACAGCATGAGCTTATGGGTGAAATAACGCCCGAACTTTTCCGGGTGATGGATACACCCTGGGAATATTTTCCTGAAACCGAAAGCGAGATCTCCGCCGCTCTGAAAAGAGCTATCGACTACATGGAAAAAGAAAACCGGCCATACGCATTTATTATGAAAAAAGGCACGGTGGCAAAACATGATTTGAAGCGAAACCCCCTGCCCGATATTCGAGGACGACAACAGGAGCGGGCGGTAATGGCTGGCAGGAAAGACGTCCTTGTGACAAGGCAACAGGCTATTCGGCGTATCATCGAACTCAGTCCGCTTGATTCAAGCGTGGTGATTGCCACCACCGGTTACTGTGGGCGCGAGTTGTTCGCTGAATCAGACCGCGCAAACCACCTCTACATG

Transcript

ANN36643-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56839	Phosphoenolpyruvate phosphomutase OS=Mytilus edulis OX=6550 PE=1 SV=3
P33182	Phosphoenolpyruvate phosphomutase OS=Tetrahymena pyriformis OX=5908 GN=PEPM PE=1 SV=1
P29247	Phosphoenolpyruvate phosphomutase OS=Streptomyces hygroscopicus OX=1912 GN=bcpB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006767 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13714 all species →	PEP_mutase	Phosphoenolpyruvate phosphomutase	Domain	Interproscan
PF12804 all species →	NTP_transf_3	MobA-like NTP transferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR015813 all species →	Homologous_superfamily	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Interproscan
IPR040442 all species →	Homologous_superfamily	Pyruvate kinase-like domain superfamily	Interproscan
IPR039556 all species →	Domain	ICL/PEPM domain	Interproscan
IPR012698 all species →	Domain	Phosphoenolpyruvate phosphomutase, core	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR025877 all species →	Domain	MobA-like NTP transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42905 all species →	PHOSPHOENOLPYRUVATE CARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0050188 all species →	Molecular Function	phosphoenolpyruvate mutase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00873	PK, pyk; pyruvate kinase	EC:2.7.1.40	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →