Gene detail

Detailed information of ANN36645-RA in Montipora grisea

Genomic Location: Scaffold_7094__1_contigs__length_25661:10179...11394
NR annotation: MCP4387918.1, hydroxymethylglutaryl-CoA lyase [Gammaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9I2A0	3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=liuE PE=1 SV=1
P35915	Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus OX=9031 GN=HMGCL PE=1 SV=1
P97519	Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Hmgcl PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003337 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00682 all species →	HMGL-like	HMGL-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000138 all species →	Active_site	Hydroxymethylglutaryl-CoA lyase, active site	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR043594 all species →	Family	HMG-CoA lyase	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR000891 all species →	Domain	Pyruvate carboxyltransferase	Interproscan
IPR014748 all species →	Homologous_superfamily	Enoyl-CoA hydratase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42738 all species →	HYDROXYMETHYLGLUTARYL-COA LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004419 all species →	Molecular Function	hydroxymethylglutaryl-CoA lyase activity	Interproscan
GO:0006552 all species →	Biological Process	L-leucine catabolic process	Interproscan
GO:0016833 all species →	Molecular Function	oxo-acid-lyase activity	Interproscan
GO:0046951 all species →	Biological Process	ketone body biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01640	HMGCL, hmgL; hydroxymethylglutaryl-CoA lyase	EC:4.1.3.4	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.