Genomic Location: Scaffold_6837__1_contigs__length_26180:19252...21217
NR annotation: MCE2398651.1, ATP synthase F1 subunit gamma [Gemmatimonadota bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN36718-RA |
| Transcript |
| ANN36718-RA |
| Protein |
| ANN36718-RA |
| UniProt accession | Description |
|---|---|
| C1A697 | ATP synthase gamma chain OS=Gemmatimonas aurantiaca (strain DSM 14586 / JCM 11422 / NBRC 100505 / T-27) OX=379066 GN=atpG PE=3 SV=1 |
| Q72SY0 | ATP synthase gamma chain OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=atpG PE=3 SV=1 |
| B0SDA4 | ATP synthase gamma chain OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) OX=355278 GN=atpG PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00231 all species → | ATP-synt | ATP synthase | Domain | Interproscan |
| PF00306 all species → | ATP-synt_ab_C | ATP synthase alpha/beta chain, C terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000131 all species → | Family | ATP synthase, F1 complex, gamma subunit | Interproscan |
| IPR035968 all species → | Homologous_superfamily | ATP synthase, F1 complex, gamma subunit superfamily | Interproscan |
| IPR038376 all species → | Homologous_superfamily | ATP synthase, alpha subunit, C-terminal domain superfamily | Interproscan |
| IPR000793 all species → | Domain | ATP synthase, alpha subunit, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11693 all species → | ATP SYNTHASE GAMMA CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015986 all species → | Biological Process | proton motive force-driven ATP synthesis | Interproscan |
| GO:0045261 all species → | Cellular Component | proton-transporting ATP synthase complex, catalytic core F(1) | Interproscan |
| GO:0046933 all species → | Molecular Function | proton-transporting ATP synthase activity, rotational mechanism | Interproscan |
ANN36718-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
