Gene detail

Detailed information of ANN36765-RA in Montipora grisea

Genomic Location: Scaffold_4683__1_contigs__length_31502:17525...18358
NR annotation: KAF5272380.1, hypothetical protein FQR65_LT17429 [Abscondita terminalis]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B4RXK9	Large ribosomal subunit protein uL13 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rplM PE=3 SV=1
Q15PI3	Large ribosomal subunit protein uL13 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=3042615 GN=rplM PE=3 SV=1
A1SA67	Large ribosomal subunit protein uL13 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=rplM PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004062 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00380 all species →	Ribosomal_S9	Ribosomal protein S9/S16	Family	Interproscan
PF00572 all species →	Ribosomal_L13	Ribosomal protein L13	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005822 all species →	Family	Large ribosomal subunit protein uL13	Interproscan
IPR023035 all species →	Family	Small ribosomal subunit protein uS9, bacterial/plastid	Interproscan
IPR000754 all species →	Family	Small ribosomal subunit protein uS9	Interproscan
IPR005823 all species →	Family	Large ribosomal subunit protein uL13, bacterial-type	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020574 all species →	Conserved_site	Small ribosomal subunit protein uS9, conserved site	Interproscan
IPR036899 all species →	Homologous_superfamily	Large ribosomal subunit protein uL13 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11545 all species →	RIBOSOMAL PROTEIN L13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02996	RP-S9, MRPS9, rpsI; small subunit ribosomal protein S9	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.