Gene detail

Detailed information of ANN36858-RA in Montipora grisea

Genomic Location: Scaffold_2790__1_contigs__length_40078:38514...39527
NR annotation: MCE2458952.1, ADP-forming succinate--CoA ligase subunit beta [Dehalococcoidia bacterium]
Species abbreviation MGRIS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8ZRW7	Succinate--CoA ligase [ADP-forming] subunit beta OS=Desulfosudis oleivorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=sucC PE=3 SV=1
A4G230	Succinate--CoA ligase [ADP-forming] subunit beta OS=Herminiimonas arsenicoxydans OX=204773 GN=sucC PE=3 SV=1
A6SUY3	Succinate--CoA ligase [ADP-forming] subunit beta OS=Janthinobacterium sp. (strain Marseille) OX=375286 GN=sucC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0234523 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08442 all species →	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF00549 all species →	Ligase_CoA	CoA-ligase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013650 all species →	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR005811 all species →	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR005809 all species →	Family	Succinate--CoA ligase-like, beta subunit	Interproscan
IPR016102 all species →	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11815 all species →	SUCCINYL-COA SYNTHETASE BETA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004775 all species →	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006104 all species →	Biological Process	succinyl-CoA metabolic process	Interproscan
GO:0042709 all species →	Cellular Component	succinate-CoA ligase complex	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN36858-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.