Gene detail

Detailed information of ANN36877-RA in Montipora grisea

Genomic Location: Scaffold_2588__1_contigs__length_41597:24248...26814
NR annotation: WP_101565230.1, MULTISPECIES: translation elongation factor 4 [Alteromonas]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN36877-RA

ATGATAAGAGAAACCGCCACCGTAGTTGCCGTTAATGGTGATACGGTCACCGTAGAAGCAGCGATTAAATCCACCTGTAACGCATGCCAAGCACAAAGTGATTGTGGTACCGGCGTTATTTCTCGTGCGCTTGCACCGAAAACGCAGCAGTTGACGCTGCGTACTCCCATGCCTGTGCGGGTTGGCCAAGAAGTGACTGTAGGCATACCGGAAGCAGGTATTTTAAGTGCATCGGCTTGGTTGTATTTGCTACCGCTTATAGCGTTTATCGGGGCATATTCGGTGTCGATATCATTACTTAGTAGTAACGGATTTACTCACGAGTTATGGGCCATGCTGCCAAGTGGGTTAGTAACCTTCTTTACCTATAAGCTAATTGCTTACAAGTTGCGTCGTGTAGAACGTACGAAATATCAACCTGTCCTATTGGGTCAACAAGATCACAGTGCAGTAATTTCCAGCATTATGCAACAATCGCACATTCGTAACTTCAGTATTATCGCCCACATTGACCACGGTAAGTCTACGCTGTCAGACCGTCTAATCCAGCATTGTGGAGGGCTAACAGACCGTGAAATGGCTGAACAGGTTCTCGACTCAATGGATCTGGAAAAAGAACGCGGTATTACTATCAAAGCGCAAAGCGTAACGCTGAACTACGAAGCGCGCGACGGTGAAACTTATCAGCTTAACTTCATCGACACTCCTGGACACGTTGATTTTACCTATGAAGTATCTCGTTCTCTTGCTGCCTGTGAAGGTGCGCTTTTGGTTGTTGATGCAGGTCAGGGCGTAGAAGCACAGACTTTGGCAAACTGCTATACCGCCATCGAGATGGATATGGAAGTGGTGCCTGTACTAAATAAAATCGACCTGCCTCAGGCTGAACCAGACCGCGTTGCAGAAGAAATTGAAGATATTGTTGGTATCGATGCACTGGACGCTGTGCGCTGCTCAGCAAAAACCGGTATCGGTATTGAAGATGTACTTGAAGTTATTGTAAATAAAATTCCGCCGCCAGGAGGTGACCGCGAAGCGCCACTTAAGGCGTTGATCATCGATTCTTGGTTCGACAACTACCAAGGCGTTGTTTCACTGGTTCGTATTGTCGAAGGCCAGCTGACCAAGAAAGACAAAATTCAAATTATGTCAAATGGTCAAACGCATCAGGTTGACAAAATTGGTGTATTTACGCCTAAGCCACTCGATACGGGCACATTAAGAGCCGGCGAAGTAGGCTTTATCATCGCAGGAATTAAAGATATCCAAGGCGCGCCTGTGGGCGACACCATTACCTTGGCTCGCGAGCCAGCTGACGCAATGCTTCCTGGCTTTAAAAAGGTTAAACCTCAGGTTTATGCCGGTATTTTCCCAATAAGCTCTGATGACTACGAAGACTTCCGTGATGCCTTGGCGAAACTAAGTCTGAACGACGCTTCACTGTTCTATGAGCCGGAAAGCTCTGCTGCGCTAGGTTTTGGATTCCGTATTGGTTTCCTTGGCATGCTGCACATGGAAATCATTCAAGAGCGTTTAGAACGTGAATATGACTTAGGTCTTATCACCACTGCGCCAACGGTAATTTACGAAGTAGAAACGACCAAAGGCGAAACCCTTACCGTAGATAGCCCAGCAAAGCTACCTCCTGTAAACGATATCGCTGAAATTCGTGAGCCGATGGTTGAAGCCAACATTCTTGTGCCACAAGAGTACTTGGGCAACGTAATTACACTTTGTGTTGAAAAGCGCGGTATGCAAACCAACATGACATACCACGGTAAGCAAGTGGCAGTAACTTATGAGCTGCCAATGGCAGAAGTGGTGCTCGATTTCTTCGACCGTTTGAAATCTACGAGCCGTGGTTTTGCATCGCTTGATTACAACTTTAAGCGTTTCCAGGCATCAGACATGGTGCGTGTTGATATTCTTATTAACGGTGAACGTGTAGACGCGTTAGCAGTAATTACGCATAGAGAAAACTCTCAAGGCCGTGGTCGTGAGCTGGTCGAAAAGCTTCGCGAGCTTATTCCACGACAAATGTTCGATATCGCTATTCAGGCGGCTATCGGTAACCATATTGTTGCAAGAAGTACAGTTAAACAGCTACGTAAAAACGTAATCGCGAAGTGTTACGGCGGTGACGTAAGCCGTAAGAAGAAACTACTTCAAAAGCAGAAAGAAGGTAAAAAGCGAATGAAGCAAGTGGGTAATGTTGAATTGCCACAAGATGCGTTCCTTGCAGTATTGAAGGTGGGCAAATAA

Transcript

ANN36877-RA

Protein

Uniprot

Uniprot term	Description
B4RVA8	Elongation factor 4 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=lepA PE=3 SV=1
Q15R31	Elongation factor 4 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) OX=3042615 GN=lepA PE=3 SV=1
Q0I4Z1	Elongation factor 4 OS=Histophilus somni (strain 129Pt) OX=205914 GN=lepA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00679	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF04246	RseC_MucC	Positive regulator of sigma(E), RseC/MucC	Family	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF06421	LepA_C	GTP-binding protein LepA C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000640	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR038363	Homologous_superfamily	LepA, C-terminal domain superfamily	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR006297	Family	Elongation factor 4	Interproscan
IPR031157	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR035654	Domain	Elongation factor 4, domain IV	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR013842	Domain	GTP-binding protein LepA, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43512	TRANSLATION FACTOR GUF1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0045727	Biological Process	positive regulation of translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03596	lepA; GTP-binding protein LepA	-	Legionellosis	ko05134	deepkoala