Gene detail

Detailed information of ANN37129-RA in Montipora grisea

Genomic Location: Scaffold_7110__1_contigs__length_25603:2553...6322
NR annotation: MCB1747982.1, NAD-dependent succinate-semialdehyde dehydrogenase [Gammaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN37129-RA

ATGGCAAAGAAAAAAGTCAGTAAACGAAAAACCAGCAAGCGCTCCGGCGCGAAAAGCACGGCCCGTAAGACCCCGACGAAAAACTCCAGCGCAAAACGAACTGCTGCTAAAAGTAGCGCCACACAGAAGAAATCGGTCGACCCGACGAACCACTTCGACGGATTCACCATCCGCGACTGCAAGCGCATCGCCAAACAAGTATTCCGAATTGAAGCCTTACACGACGAACAAGTAAAGGCGATGCGCTCGGTGTTGAAACAGAACGACACCCTCGCTGTATTGCCGACCGGGTTTGGCAAATCGTTGATCTATCAAACGCTGGCTTGTTTGGTGGAACAACCGGTGATCACGATTTTTCCGCTTATCGCGTTGATGCGTGATCAAGAACTCGCACTCAAACGGGCCAAGGTCCCGGTAGTCCGAATCGATAGTTCTCTAGGCAAGCGTGATAGGGAGGCGGCTTTAAAAGCGGTTAAATCGGGAGGACGCCTGATAATTCTGACCACACCCGAATCCCTGCAGAAAAAGGATTTGCTCCAGGCGCTGAAGAAAAATCCGCCCGCTTTGCTAACCATTGACGAGGCACACTGTATCTCCGAATGGGGTCATGATTTTCGGCCGGCTTACCTGGCATTGGGCAAAACTCGAGAGCGATTAGGTGGCCCACCCGTATTGGCCTTGACTGCGACGGCTACCGAGCGCGTCCAGGACGACATTGCCGCGCGCTTGCAAACGACGAAGCCGGTAAAAATCATTGCGCCACCGCACCGAAACAATTTGCGCTTTAGTGTGCGCAACGTACCCGGCAGCATAAAGTCAACCCTCGCCGGCAAATTAATCCGGAAATTGCGACGACCGGGCATCATTTACTGTTCAACCACCAAATCAGTGGACGAAATTTATGCGGCGTTGAAACGTGCCGGGATTCCGTCCACCCGTTATCACGGCAAGATGGCAAAACTGGAGCGTGAAAAGGCGCAGAAAGAATATGGCCGACCGCGAACACGCAAAGTCATGGTCGCAACGAGTGCGTTTGGAATGGGCATCGACAAACGCAATATTCGTTACATCATGCACTACCAGGTGCCAGGTTCGATTGAACAATATGTGCAGGAAGCAGGACGCGCTGGACGAGACGGCCGCCCGGCATCTTGTATACTGCTTTATGACCCCGCGGATCTGGATATACAAAAACGCCTGATAACGAAAGACCACGTCAACCTGAAACAACTGCAGAGTCTCGGCGACGCTTTGTGCGCTTGGGCTGACTCAGGAGAAGAAGTATCGGTCGCCGACCTGGCCTTGTCCGCAGCCGTGCAAACAACCTCATGCCGGGCTCTGTGCCATCGACTCGAGGAAGCGGGGTTGGTCACGACCACCGCGCGCGACAAATTAAAGGTCACCGTAAAGACCAAACACTTACGCGCCGGTATTGAAGAATTGGCAGAGCAATTTCAGGTTGTCCAGCGCGGCGACTTGAAACGGCTGAACCAAATGGCCGAATACGCGCAAAGTACCTCATGCAGAAGCGTTTTCATCAACGACTGCTTTGTCGATACCCCGATAGAGCCGTGCGGTACGTGCGACCGTTGCAAAGCAAAAAAGGCCGCCCCGTATAGCGACTGCCCATCGACATATGCTCCTGGGGCCGGCTTGCAGGGAGATGTAGCAATGCTTATCAATGGCCAGTGGGTCGATGCAACAAACAATCAGGTCTTCGACGTAACGAACCCGGCAACCGGAGAAGTGCTGGGAAAAGTCTGCGATGGCGGGCGCGCCGAGGCAATCGCCGCAGTCGACGCCGCCGAGGCAGCTTTTCCGGCCTGGGCTGGCACTACGGCGTTCGCCCGCGCCGACATCCTGCGACGCGCCTATGACCTGATGGTCGAGCGCAAAGAACATCTCGCAACGGTAATGACTACCGAACAAGGAAAACCGCTTAAGGCGGCCCGCGTCGAGTGCCAATATGCCGCCGACTTCCTGCTGTGGTTTTCTGAAGAAGCGAAGCGCGTTTACGGCGATATCTTGCCTTCACCTCGAAAAGACCAGCGCTTTATGGTGCTGCGCCAACCGGTCGGGGTGGTCGGCGCTATCACGCCGTGGAATTACCCCATCTCCATGCTCACCCGGAAAATCGCGCCGGCGCTCGCAGCGGGCTGCACAGTCGTGCTGAAACCGGCGGAAGCGACACCGATGTGCGCGATAGAAACTTTCAAGATTCTGCAAGAAGCGGGCGTACCCGACGGCGTCATCAATCTCGTTACCGCTAACGATCCCGCGCCTATCGGCGACGTCTTCATCAATGACCCGCGCGTGCGCAAGATTACTTTCACCGGTTCCACGGCCGTGGGCAAACAACTTGCCGCCGGCGCCGGCCAACAAATGAAACGAATTTCGCTCGAGCTTGGCGGACATGCGCCCTTTATCGTATGTGAAGATGCCGACCCGATTCACGCTGCCAAAGGCGCCGCCGCAGTCAAGTTTCTGAATACCGGACAAGCGTGTATCAGTCCTAATCGCATTTACGTGCACAAAAATGCGCTCGATGCCTTCACCGGTGAATTGACCAAGCGTGTTTCCCGGCTAAAAGCGGGTAACGGGCTGGACGAAGGAATCGGGATCGGACCGTTAGTGAACGACAAAGCGGTTGCCAAAGTTGAAAGGCAAGTCAACGACGCCGTGGATAAAGGCGCCGAACTATTGAACGGCGGCGCGCGCTTACTCGATGATGGCCTCGACAAGGGCCACTTCTTTGCGCCAACTGTATTGTCACAAATCAATTCGGACATGCTGATTTACCGCGAAGAGACTTTCGGGCCAGTCGCCGCAATCGTAGCTTACGACGATGATGACGATGTCATCGCGATGGCCAACGATACCCACTACGGCCTGGCCGCGTACGTGTATACCAATCAATTGGCGCGCGCCATGCGCCTTTTCGAAGCACTGAATTTCGGCATCGTCGGTATCAACGATATCAACCCGACGGCCGCAGCGGCGCCGTTTGGCGGCGTGAAGGAAAGCGGTTTGGGTCGCGAAGGCGGTCGTCAGGGAATCGATGAATACCTCGACGTAAAACTGGGCGGCTTCGCGATTTAA

Transcript

ANN37129-RA

Protein

Uniprot

Uniprot term	Description
P25526	Succinate-semialdehyde dehydrogenase [NADP(+)] GabD OS=Escherichia coli (strain K12) OX=83333 GN=gabD PE=1 SV=1
B9F3B6	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=ALDH5F1 PE=3 SV=1
Q88RC0	Glutarate-semialdehyde dehydrogenase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=davD PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16124	RecQ_Zn_bind	RecQ zinc-binding	Domain	Interproscan
PF00171	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR032284	Domain	ATP-dependent DNA helicase RecQ, zinc-binding domain	Interproscan
IPR016162	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR015590	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016163	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR050740	Family	Aldehyde Dehydrogenase Superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR004589	Family	DNA helicase, ATP-dependent, RecQ type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43353	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0004777	Molecular Function	succinate-semialdehyde dehydrogenase (NAD+) activity	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0009450	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan