Genomic Location: Scaffold_2888__1_contigs__length_39427:29025...29489
NR annotation: WP_137100757.1, (2Fe-2S)-binding protein [Phreatobacter sp. NMCR1094]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN37145-RA |
| Transcript |
| ANN37145-RA |
| Protein |
| ANN37145-RA |
| UniProt accession | Description |
|---|---|
| Q51697 | Isoquinoline 1-oxidoreductase subunit alpha OS=Brevundimonas diminuta OX=293 GN=iorA PE=1 SV=1 |
| Q88FX9 | Nicotinate dehydrogenase subunit A OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=nicA PE=1 SV=1 |
| Q0QLF3 | Nicotinate dehydrogenase small FeS subunit OS=Eubacterium barkeri OX=1528 GN=ndhS PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000566 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01799 all species → | Fer2_2 | [2Fe-2S] binding domain | Domain | Interproscan |
| PF00111 all species → | Fer2 | 2Fe-2S iron-sulfur cluster binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001041 all species → | Domain | 2Fe-2S ferredoxin-type iron-sulfur binding domain | Interproscan |
| IPR002888 all species → | Domain | [2Fe-2S]-binding | Interproscan |
| IPR036884 all species → | Homologous_superfamily | [2Fe-2S]-binding domain superfamily | Interproscan |
| IPR012675 all species → | Homologous_superfamily | Beta-grasp domain superfamily | Interproscan |
| IPR051452 all species → | Family | Diverse Oxidoreductases | Interproscan |
| IPR006058 all species → | Binding_site | 2Fe-2S ferredoxin, iron-sulphur binding site | Interproscan |
| IPR036010 all species → | Homologous_superfamily | 2Fe-2S ferredoxin-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR44379 all species → | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0051537 all species → | Molecular Function | 2 iron, 2 sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K07302 | iorA; isoquinoline 1-oxidoreductase subunit alpha | EC:1.3.99.16 | Enzymes with EC numbers | - | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
