Gene detail

Detailed information of ANN37494-RA in Montipora grisea

Genomic Location: Scaffold_9146__1_contigs__length_20428:1058...3554
NR annotation: WP_039224852.1, MULTISPECIES: sigma-54 dependent transcriptional regulator [Alteromonas]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN37494-RA

ATGGCTTTTGACAGCACACCACAATCAACTGAGTACTCAGCATCAAGCTATGCGTTAGATAGTATTGATAATGCTATATCTCGTGATGAATACGACCCCTCAAGCAGTGACGATATTTCGTCTTTACGGTTGCAGGCGAGTCGACTTGAACACTTACTTCAGGTAATGCCTGCGGGCGTTATCGTTATAGACGGCAAAGGGATCGTACGCCAAGCCAATGAACAAGCGAAAGCACTGTTAGGTGAACCGCTGGAAGAGGAAGTGTGGCGAAGTATTATCACGCGCTCATTTAAGCCCCGCGCTGACGACGGCCACGAAGTCTCACTTGTTGACGGTCGCCGAGTGAAGCTTTCTATCACGCCGTTAGAAAATGAGCCTGGACAATTAATTGTTATTACCGACTTAACCGAAACGCGGCAGCTGCAAGCACGCGTGAGTCATATGCAGCGCCTGTCTTCTTTGGGAAAAATGGTAGCATCTTTGGCTCACCAAATTCGTACGCCTCTTTCTGCGGCCATGCTCTATGCGTCTAATTTAACGCGCAAAGGCTTGGGACAAGAAGCACAAACTCAATTTGCAAACAAGCTAACTGACAGGCTTAAAGAGCTAGAGAGTCAGGTTAACGACATGCTGCTGTTCGCTAAGTCAGGGGAAGAACAAGTGGTCAGCCAAATTAGCTTGGGAGAGTTGTTTACTTCAATTGAAGGCAGTGCCCAAACCATGACGGCTCAAGCACAGCAAACGCTAACTTTTAGCGGCTTCGATAAAAACGTATCTATTACCGGTAATCTTACAGCGCTTCAAGGCGCGTTATTAAACCTTGTTCACAACGCGAGCCAAGTTACTCCGAAAGGGGAGTGCGTACACGTAGAAACTGCAGTGTCTGATAAACGTTTGCATGTGGCTATTATAGATAAAGGTCCTGGCGTACCGGATAAACTCAAAAACAAAATTTTTGAACCGTTTTTCACAACTAAAACTCATGGCACGGGCCTTGGCCTTGCGGTGGTTAAATCCGTCGTAAACGCCCACAACGGTTTGCTTAGCGTATCAAATATGCCAGAAGATGACGCAGGATTACGCGAAGCACTCCTAGACACCCTTCTATTAGGTAACTATGAGGTTGTTGCTGCTGACTGCGCTGAAGAAGCGTTAATGGTGCTATCTTCGCGCTCCGTCGATTTAGTGGTAAGCGATATTCAAATGGGCGAAATGAGCGGCTTAACGCTACTTAAAAGTATCAAGACCAAGTACCCCAATATGCCGGTGCTATTGATGACAGCCTATGCCACTATTGATGATGCCGTGCAGGCAATGCGCGATGGCGCTACAGACTATTTATCAAAACCGTTTGCCCCAGAAGTACTGCTTAATTTAGTGGGACGCTACGCGCCGGCTCAAAAAATAGAGTCACGCACGCCTATTGTTGCTGACCCTTCAAGCTTGAAGTTACTTGAGCTTTCTCGCAAAGTCGCGAAGTCCGACGCCACTGTGATGGTAATGGGACCAAGCGGTTCGGGTAAAGAAGTGCTGTCTCGCTATATTCACGATCAGTCGCCGCGGAGTGATGCGCCATTTGTCGCCATCAACTGTGCAGCCATACCAGAGAACATGCTAGAAGCGACCTTGTTTGGTTACGAAAAAGGTGCGTTCACCGGTGCAATCCAAGCTTGCCCGGGTAAATTTGAACAAGCCCAAGACGGTACGCTGTTACTTGATGAAATAACCGAGATGGATTTGGCGCTTCAAGCTAAACTGCTACGCGTGTTACAAGAGCGCGAAGTAGAGCGTCTTGGCGGACGTAAAACCGTTAAGCTCAACGTCCGTGTTATTGCTACAAGTAACCGAGATTTGAGAAAAGCAGTGGATGCGGGAGAGTTCAGAGAAGATTTGTACTACCGCTTAAATGTATTCCCTATCGAGTGGCGCCCGCTTTCGGAACGTCCGGGTGATATTGTCCCTCTTGCCGAACACCTGGTTCAGCGTCACGCTAGTTCTCAAGGGCTGGGTACTATCAGGTTAAGCGCAGCAGCACGCAATAAGCTGTCACAATACAGCTGGCCAGGGAACGTTCGCGAACTAGAAAACGTGGTTCAACGGGCGCTTATTTTATGTGAACACAATGAAATCGACGCCAGCGATTTAATGATTGACGAAGACATGACGGCACCTGTTGAAACACTGCAAGAGCATGTTGAAGAAAATAGGCTAGGGTCTGAGCTGCGCTACCAAGAACATCAAATTATCCTCGATACATTGGTGTCGTGTAACGGCAAGCGTAAAGATGTGGCAGAAAAGCTCGGCATTAGTCCAAGAACCCTTCGTTACAAATTAGCGCGCATGCGCGAAGACGGTATTGAAGTGCCCGCATAA

Transcript

ANN37494-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9I4N3	Response regulator protein FleR OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=fleR PE=1 SV=1
Q06065	Regulatory protein AtoC OS=Escherichia coli (strain K12) OX=83333 GN=atoC PE=1 SV=2
P17899	Transcriptional regulatory protein FlbD OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=flbD PE=4 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0100700 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00158 all species →	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF02954 all species →	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan
PF13188 all species →	PAS_8	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR002078 all species →	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR025944 all species →	Conserved_site	Sigma-54 interaction domain, conserved site	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan
IPR002197 all species →	Domain	DNA binding HTH domain, Fis-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071 all species →	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN37494-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.