Gene detail

Detailed information of ANN37715-RA in Montipora grisea

Genomic Location: Scaffold_9508__1_contigs__length_18768:5938...8692
NR annotation: MCP4331036.1, valine--tRNA ligase [Gammaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN37715-RA

ATGGAAAAAACCTACGATCCTCACGCGATTGAGCAAGCCTGGTATCAGCGCTGGGAAGACCAAGGATATTTTGGCGCTACCGATACGATTATGGATACGCTGATCCGTTATCACCGCATGAAGGGGGACAATACGCTTTGGCAACCCGGCACCGATCATGCCGGCATCGCGACGCAAATGGTGGTCGAGCGCCAGCTGGCATCCGAGGGTAAGTCGCGCCACGATCTCGGGCGCGAAGCTTTTACCGATCGCGTTTGGCAGTGGCGGGAAGAATCGGGCGGCACCATTACTCGACAACTGCGACGCATGGGGGCGTCGCCGGATTGGGCACGTGAACGATTTACCATGGATGACGGACTTTCGGCGGCGGTACAGGAAGTGTTTATCAAGCTCTACGAAGAAGACTTGATTTACCGCGGCAAACGTTTGGTCAACTGGGACTGTGTGTTTCACACCGCGGTTTCCGACCTCGAAGTCATTTCCGCCGAAGAAGACGGCCATTTGTGGCACATGCGCTATCCGATTGCGGGTGAAGTCGGCTATGTCGTCGTCGCCACCACCCGTCCCGAAACCATGCTCGGCGACACCGCCGTCGCGGTGCATCCGGACGACGACCGTTACGCGAGCCTGCTGGGTAAACAAATCGAATTGCCGTTGACCGGGAGGAAGATTCCGGTGATCGCCGATGAATACGTCGATCCTGAATTCGGCTCGGGCTGCGTCAAGATCACCCCCGCCCATGATTTCAACGATTACGAGGTGGGCCAGCGCCACAGCCTGGACATGATCAATATCTTCACCATCGATGCCAAGCTCAACGACAATGCTCCCGAGGCCTATCGCGGCATGGATCGATACGAGGCGCGCGATGCCGTGGTTGCGGATTTGCAGGCGCTCGAGCTGCTCGACAAGGTCGAAGACCACAAGCTCATGGTGCCGCGCGGCGATCGCAGTCATTCGGTGATCGAGCCTTATTTGACCGATCAGTGGTTCGTGCGCGCCGAGCCGCTCGCCAAACCGTCGATCGAAGCGGTCAAAAACGGCAGCATCAAATTTATACCGGATAACTGGAGCAAGACGTATTTCAACTGGATGGAAAATATTCAAGACTGGTGTATTTCGCGCCAGCTCTGGTGGGGGCACCGGATCCCCGCTTGGTACGACCCCGACGGCAAGCTCTATGTCGCGCCCAGCGAAGCCGAGGTGCGGAAAAAATTCGGGCTGGCCGACGATGTCGAATTGACACAGGACGAAGACGTACTCGATACCTGGTTTTCGTCGGCGTTGTGGCCTTTCAGCACCCTCGGTTGGCCGGATCGAAGCGATGCCGCGCTAAAAACTTTTTACCCGACCAGCGTGTTGGTGACCGGCTTCGATATCATCTTTTTTTGGGTCGCGCGCATGATCATGTTCGGCCTTAAGTTCATGGACGAAGTGCCCTTCAACGAAGTCTATATCCATGGCCTGATCGAAGCCACGACACGCAAACACTTTCCGGACGGCATTCCGGCCTACGGCACCGACGCCTTGCGCTTTACCTTTACCGCGCTGGCGACCACCGGGCGCGACATCCGCTTCGACTTGGGACGCATCGAAGGCTATCGCAATTTTTGCAACAAGCTGTGGAATGCTACCCGCTACGTGTTACAAAACACCGAAGGCCGGGATTGCAGCGCGGGCACGGCATCGCTCGCCGACCGCTGGATTATTTCGCGCCTGCAGCAGGTGACCGAAGATACCATCGCCCACCTCGAAGGCTATCGCTTCGATTTGGTCGCGCGCGATATTTACGAATTTGTCTGGAATGACTACTGCGACTGGTATATCGAATTGTCCAAGCCGGTACTTTATTCGGACGATTACCCGGAAGACGCCAAGAAGGCCGCGCGGCACACATTGGTTACCGTGCTGGAAAGCATTCAACGTTTATTGCATCCGATCATGCCCTTTATTACCGAAGAGCTGTGGCAGCGCGTCGCGCCGCTGGCCGCCGTCGAAGGTGAAACCGTCATGCATTGCCGTTACCCGCAAGCCGACAAGGCGGCGGTCGACGCGGCCGCGCTGGAAGAGCTGGATTGGGTCAAAGCATTTGTCATGGGCGTGCGCCAAATTCGTTCCGAAATGGATATCAAACCCGGTAAACCGCTGCCGGTTTTGTGTCAGCACGGCGGCAAAGAAGACCGGCAGCGCATCGAGCGCAATCGCGCCTTGCTCGAATCCCTGGCCAAGCTCGAATCGATAACCTGGCTCGATATCGACGCACAGGCACCCGAGTCGGCTACGTCGTTGGTCGGCGAGATGAAACTACTGATTCCGTTGGCGGGCCTCATCGACAAGGAAGCCGAACTTGCCCGCTTAAACAAACAAATCGAGCGCAAGGAAAATGATCGCGATCGAATCAGCGCCAAGCTTGGCAACGAGAATTTTATATCCAAAGCGCCCGCCGACGTGGTCGACAAAGAAAAAGAAAAGCTGGCCGACATCGAGTCCACCCTCGCCAGTTTGCGCGAACAGGCGGACAAGATTTCGGACATTTAA

Transcript

ANN37715-RA

Protein

Uniprot

Uniprot term	Description
Q3JC50	Valine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107) OX=323261 GN=valS PE=3 SV=1
Q606C1	Valine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=valS PE=3 SV=1
Q0VSA8	Valine--tRNA ligase OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) OX=393595 GN=valS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10458	Val_tRNA-synt_C	Valyl tRNA synthetase tRNA binding arm	Domain	Interproscan
PF08264	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan
PF00133	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009008	Homologous_superfamily	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR002303	Family	Valine-tRNA ligase	Interproscan
IPR019499	Domain	Valyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR037118	Homologous_superfamily	Valyl-tRNA synthetase, tRNA-binding arm superfamily	Interproscan
IPR013155	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR009080	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR033705	Domain	Valyl tRNA synthetase, anticodon-binding domain	Interproscan
IPR010978	Homologous_superfamily	Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm	Interproscan
IPR002300	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11946	VALYL-TRNA SYNTHETASES	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002161	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004832	Molecular Function	valine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006438	Biological Process	valyl-tRNA aminoacylation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01873	VARS, valS; valyl-tRNA synthetase	EC:6.1.1.9	Transfer RNA biogenesis	ko03016	deepkoala