Genomic Location: Scaffold_900__1_contigs__length_68611:61188...62495
NR annotation: MXX53587.1, F0F1 ATP synthase subunit alpha [Dehalococcoidia bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN37752-RA |
| Transcript |
| ANN37752-RA |
| Protein |
| ANN37752-RA |
| UniProt accession | Description |
|---|---|
| Q3Z8Z4 | ATP synthase subunit alpha OS=Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195) OX=243164 GN=atpA PE=3 SV=1 |
| A5FRQ3 | ATP synthase subunit alpha OS=Dehalococcoides mccartyi (strain ATCC BAA-2100 / JCM 16839 / KCTC 5957 / BAV1) OX=216389 GN=atpA PE=3 SV=1 |
| Q3ZZT9 | ATP synthase subunit alpha OS=Dehalococcoides mccartyi (strain CBDB1) OX=255470 GN=atpA PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00006 all species → | ATP-synt_ab | ATP synthase alpha/beta family, nucleotide-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005294 all species → | Family | ATP synthase, F1 complex, alpha subunit | Interproscan |
| IPR020003 all species → | Active_site | ATPase, alpha/beta subunit, nucleotide-binding domain, active site | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR000194 all species → | Domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48082 all species → | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0015986 all species → | Biological Process | proton motive force-driven ATP synthesis | Interproscan |
| GO:0043531 all species → | Molecular Function | ADP binding | Interproscan |
| GO:0045261 all species → | Cellular Component | proton-transporting ATP synthase complex, catalytic core F(1) | Interproscan |
| GO:0046933 all species → | Molecular Function | proton-transporting ATP synthase activity, rotational mechanism | Interproscan |
ANN37752-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
