Gene detail

Detailed information of ANN37763-RA in Montipora grisea

Genomic Location: Scaffold_792__1_contigs__length_73391:3143...8314
NR annotation: MYC15394.1, RecQ family ATP-dependent DNA helicase [Gemmatimonadota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN37763-RA

ATGGCCTCGCAATCTCTTGTTGATCGCTTCACAGCGGAAACGAGCGACCGGAATACACCAAGCGCTCGCTCAGGCACCGACCGCTTTTCCGCCGACTATCTCGCCATAGACCTCGAAGTCGGACGGCACGACAATCGCATCCATGCCTTTGGCGCGGTACGGTCGTGGAGCGGCAAGGCCCACACATTTCACGGGGGAGACCTGGACGCAGCTCTGGCCTATCTGGACACATTTGCCGAAGGTGCGGATTATCTGCTGGGCCACAACTTGCTCGCGTTCGACCTGCCCCATCTGGCCGTAGCAAAATCCGATCTGCGGCTCCTGCGCTTGCCAGCGGTGGATACCTTATGGCTCAATCCTCTGGCCTTCCCCCGCCACCCTTATCACCATCTGGTCAAGCACTATCAGGAAGGTCAACTCAAGCGCGGGCGCGTCAACGCCCCGGAACTGGACGCCCGCCTCTCCTTGCAGGTGTTGAACGACCAGCACGAGGCGCTGCGTGAGTCCGCCCCCGACTTGCTGACGGCCTGGCACTGGCTGACCGGCACGGAAGACGCCGCGGCCGGCTTCGACGCTTTTTTTGCATCCGTGCGGCGGACGGCCCGGCCGTCCCAGGCTGATGCGGACGCGGCTATCCACGCCCGGCTCACGGACACGACCTGCCTCGTCCAGAGCCGTGCGGTGCTGCAGGAAGTCCTGGCGGATAGCACGGGCAAGGGCTGGGGGCTGGCGTACGCGCTGGCTTGGCTGTCCGTATCCGGTGGCAACTCGGTCATGCCCCCCTGGGTTCGACACCAGTTCCCGGAAGCCGGCCTACTCGTGCGCCGCCTGCGGGATATGGCCTGTGACAGCCCCGCCTGTGCCTGGTGCCGGAAACGGCACGACGCCCGTAAGGAACTGAAACGCTGGTTCGGGTTTGCAGGCTTCCGCCCAGAGCCGACGGATGACAGGGGACAGCCCATGCAGCAGTCCATCGTTGAGGCGGTCATGGCCGGGCAGCATGTTCTGGGTATTTTGCCGACGGGCACCGGCAAATCTCTTTGCTATCAGATTCCGGCCCTGTCCCGGTACGACAAGACCGGCGCACTGACGGTCGTCATCTCGCCGCTGGTGGCGCTCATGGCAGACCAGGTGTCCGGCTTGGAAGCGCGGGGCATCGATTCCTGCGTGACCATTAACGGCATGTTGTCCATGCCCGAGCGAGCCGAGGCGCTGGACCGGGTGCGCCTCGGCGATGCCAGCATCCTCCTTGTCTCACCCGAGCAACTGCGCAGCCGTGCCGTGCGCCGGGCCCTCGACCAGCGCGAGATCGGCACCTGGGTCCTGGACGAGGCACATTGCCTGTCACGTTGGGGCAATGACTTCCGGCCCGACTACCGCTATGTGGCACGCTTCATCCGTGAGAAGACGCCTGACGGACAGATCGTGTGTCTGACGGCGACTGCCAAGCCCGATGTGCGGGAAGACATCCGTGCCCACTTCCACGACAGGCTCGACGTTGATCTCACCGTCTTTGACGGCGGCGCCCAACGGACCAACCTGGAGTTTGAGGTTATGCCGACGACGGGCGGCGAGAAGTTCGCCCACATCCATCAGGTCCTGACCGTGAACCTGCCACCGGATACACCCGGCGGCGTCATCGTATACTGCGCCACACGCCGCCAAACCGAAGATATCGCCCAATATCTATGCGCCAAGAATGTTGCCGCAGCCCACTTCCACGCCGGCCTGTCACCGGAGATCAAAAAGGACGTGCAGCAGCGCTTCATCAGCGGCGATATCCAGGTGATCGTCGCCACCAATGCCTTTGGCATGGGCATCGACAAGCCGGACGTGCGGCTCGTCATTCACGCCGATATCCCCGGCTCGCTGGAAAACTACGTCCAGGAAGCGGGCCGGGCCGGACGTGACCGAGAGACGGCCCGTTGTGTGCTGCTCTACACGACAGACGATGTCGAGCGACAGTTCGGTATGTCGGCCCGCTCGCGTCTGACCCGGCGCGAAATTCACACCATCCTCAGGGCGCTGCACAACCTGGATCGCAAGAAGCGCATGAACGGCCAAATCGTCGCCACTGTGGGAGAGATTCTCGGTGAGGACGAGGACGCTGCGTTCGAGCGCGACACCGCAACCGACGATACGCGTGTGCGCACTGCCATCTCCTGGCTGGAGGAGGCCGAACTGTTGACCCGCGAGGAGAACCGCGTGCAGGTGTTTCCGTCCTCCCTGCGGGTCAGCTCAATAGAGGAAGCCCGAGCCAGGCTGGCCAGGGCCAAGGTTGCGGCCGGCTATCGTCAACGGCTGTTGGCCATTACCGGGAATTTGATCGACGCCGACCCTGACGAGGGCATTTCTACCGACGAATTGATGGCAGTCTCCAGGCTGCCCGCAAACCAAGTGCGCCGCGCCCTGCATGATCTGGAACGGCTAGGTATTGCCAACAACGACACCGTGCTGACCGCCTTCGTGCATGCGGGTGTACAGCGTGCCTCAACAAAACGCTTCGACGAGGCCGCGAACCTGGAGCGCGCGCTGATTGACGCCCTACGGGAAGCCGCCCCGGACATGGGGAAGGACGACACCTCGACGCTGCACCTGCGGGTCGTCACCCAAAGGCTCAAGGACGCCGGACACGCCTCTGCCCTGCCGGAGCGCGTGGTGCGCATTCTGCGCGGCTTTGCCATGGACGGACGCGACGAAGCAGGCGGCAGGGGCAGCCTGGCCTTGCGCGGCTTGGGACCGGAGGCGGTACAGGCGACGCTCCAGCGCGGGTGGCCAGACCTGACCGAGACTGCCAAGCGACGGCGCGCCGCAGCACGAACCCTGCTTCAGCATCTGCTCGACAGCCTGCCCGCGGGGAGTCGAGGCGTGGACCTGTTGGCCGAGACAACGCTCGGCAAACTGTTGAATGCCATCCGGTCCGCCCCTGAGCTAAAGACTACGATCAAGAACCCCGAAAAGGTACTGGACCGCGCCTTACTGTGGCTGCACGAACAGGAAGTCATTCGCCTGAATAAGGGGCTGGCGGTATTCCGTCCGGCCATGTCCATCCACCTGAGCCAGGAACAGTACCGCTTCACCAACGCCGACTTCATGCCGCTCAAGCTCCATTACGATGACCAGGTCCTTCAGATTCACGTGATGGCGGCCTATGTCCAGCGGGGCTTGCAGACCATGGACGATGCGCTGGCGCTGGTCGTGGACTATTTCAGCCTGAAGCAGCAGGACTTCCTGCGCCGTTGGCTGCCCGACCGCGACAAGGAAATTGCGCGCCAGACTACACTGGAATCGTGGCGGTCGATTGTGGATGGTCTGAAGAACTCCGTCCAGCAGCGCATTGTCGCCGACGAGCGAGAACAGACCAACGTGTTGGTGCTGGCCGGTCCCGGGTCCGGTAAGACGCGGGTCCTGGTGCACCGGATCGCCTATCTGCTGCGCGTGCGGCGGGTCAATCCCCGCGGCGTTCTCGCCCTGGCCTACAACCGCCACGCCGCAGTGGAGATTCGCCGTCGCCTGACGGAATTGGTCGGCGACGACGCCCGTGGCGTGACTGTGCTGACCTGTCACGGCTTTGCCATGCGGTTGGTGGGTGCCAGCTTCAGTGGCCGCGCAGAGCGACTGGACAACGACGCGTTCCGCGAAGTGCTTCGACAGGCCGTAGCCCTGTTGCGGGGGACAGGGCTGCCGCCGGACGACGCGGATGAGCAGCGGATGCGTCTGCTGGCAGGTTTCCGCTGGATACTTGTGGACGAGTACCAGGACATCGGTTCGGAGCAGTACGACTTGATCTCGGCCATAGCCGGCCGAACCCTGGCCGACGAGGACGATAAACTCAGCCTGTTTGCCGTGGGCGACGACGATCAGAACATCTACGCTTTCGACGGCGCGTCGGTCGAGTTCATCAAGCGTTTCGAGGCGGACTATCGGGCGAGGCCCGTTTATCTGACGGACAATTATCGCTCCACGGCCCATATCATTGCCGCAGCCAACGCCGTCATTGAGCCGGCCGAACGACGCATGAAATCCGAACATCCCATCCACATCAACCGGGCGCGCGCCAAGCAGCCGTCCGGTGGGGTGTGGGAGGATTTGGACTCCGTGTCGCGCGGACGGGTCCAGACCGTGCCGGTACGGCGCGATGCGATCTCGCAGGCTCAGACGGCAATAGCGGAGTTGCAGCGTCTGTCCGCCCTCGTGCCAAACTGGGACTGGTCTGCGTGCGCCGTCATCGCCCGCGAGTGGCAATACCTGGAGTCGGTACGGGCCTGCTGCGAAGTCCACGGCATTCCGGTCCAGATGGGCAACGAGGAAATCCCGGGGTTTTGGCGCTTGCGAGAGACCCGGGCATTGCTCGCCTGGCTGCGCCAGCGCGAAACCGATCTCATGGACAGTAGCGTCCTCAGCGCGTGGCTGGGCACCCCAGTCTCCAATCCCTGGATCGAACTGCTGAGCGAAGCCGTGAACGAATACGCCCTGGAAACCAGTGGAGCGGAAACTCCGCTGGACCACTTCACCGAGTGGCTGGCGGAGTGGGGGCGAGACATCCGTCGCCGACAGCGCGGTCTGTTGCTGCTGACCGCCCATCGTGCCAAGGGACTGGAGTTCGACCACGTGATCGTTCTGGACGGCGGCTGGGACAAAGTTGGCCGTGGCGAAGACCCAGACGCACCACGCCGGCTCTACTACGTGGCCATGACTCGCGCCCGGCAGACCTTGACGCTGACATGTTTTGAGAGTCCCCATTCGTTACAGGCCATGTTGCGCGATCATCCTTCGGTCCTGCACCGCCCCCGGGTCACACTACCGCCGCCCAGCCCGGAAATGACTGCCTGTTATCGACGACTCAGCCTGCGCGATGTCGATCTCAGCTTTGCGGGACGCTACCAGGCCAGCAGTCCGGTGCAGAGCGCCATCGCCGCGCTATCGCCTGGTGATCCACTCCAAGTCCGTACTGCCCGGCAACCGTGGCTGCTGCTGGACCGTACCGGCACCGTGATAGGCCGCCTGGCCAAAGGCTATACGCCGCCGGCTGACATGCGGCTCCGGTCCGCGACGGCCGCAGCTGTTGTGGCGCGAAGACGTACAGATTCGGCTCCGCAGTACCAGGACGCACTCAAGTGCGATGCGTGGGAGGTGGTTGTGCCGGAACTGGTATTCCAGCGGGAGGGCTGA

Transcript

ANN37763-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O34748	ATP-dependent DNA helicase RecQ OS=Bacillus subtilis (strain 168) OX=224308 GN=recQ PE=1 SV=1
P15043	ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12) OX=83333 GN=recQ PE=1 SV=5
P71359	ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0044050 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13361 all species →	UvrD_C	UvrD-like helicase C-terminal domain	Domain	Interproscan
PF13245 all species →	AAA_19	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR014016 all species →	Domain	UvrD-like helicase, ATP-binding domain	Interproscan
IPR014017 all species →	Domain	UvrD-like DNA helicase, C-terminal	Interproscan
IPR004589 all species →	Family	DNA helicase, ATP-dependent, RecQ type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13710 all species →	DNA HELICASE RECQ FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03654	recQ; ATP-dependent DNA helicase RecQ	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.