Genomic Location: Scaffold_767__1_contigs__length_74721:14125...15198
NR annotation: MAG36516.1, alpha-ketoacid dehydrogenase subunit beta [Dehalococcoidia bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN37802-RA |
| Transcript |
| ANN37802-RA |
| Protein |
| ANN37802-RA |
| UniProt accession | Description |
|---|---|
| O34591 | Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis (strain 168) OX=224308 GN=acoB PE=3 SV=3 |
| P27746 | Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=acoB PE=1 SV=3 |
| Q92IS2 | Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=pdhB PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02779 all species → | Transket_pyr | Transketolase, pyrimidine binding domain | Domain | Interproscan |
| PF02780 all species → | Transketolase_C | Transketolase, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005475 all species → | Domain | Transketolase-like, pyrimidine-binding domain | Interproscan |
| IPR009014 all species → | Homologous_superfamily | Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II | Interproscan |
| IPR029061 all species → | Homologous_superfamily | Thiamin diphosphate-binding fold | Interproscan |
| IPR051467 all species → | Family | Pyruvate Dehydrogenase E1 Beta Subunit | Interproscan |
| IPR033248 all species → | Domain | Transketolase, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43257 all species → | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K21417 | acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta | EC:1.1.1.- | Enzymes with EC numbers | - | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
