Gene detail

Detailed information of ANN37826-RA in Montipora grisea

Genomic Location: Scaffold_2606__1_contigs__length_41475:32871...35921
NR annotation: MCE2557306.1, sigma 54-interacting transcriptional regulator [Acidobacteriota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN37826-RA

ATGATTGCGGCGAGGCGAGACGAAAGGTTGCCCCAAGCCGTGTTGGGACGCTTCGTCGCGTTGTTGTTCGGGAGCGAGGAGATGGTCGGTCGGAGCGCCGTCCGAGCGGCTCTTCGACCCGTCGTCCGGGGTTGGCACGACCTCCTGCTGCCGTTCCCGGCGGATCGACTGGTCGCGGACGTTCTGGATCACGCCCCCTTCCTGTGGGGAGGCGAGCATCGAGCCGCGAGGGTGTCCCTCGTTGCCGTGCACGAACACGAGGAAGGCGAAGAGGTGGTGGTCGTCGGTCATTCCCGATGGCGGCGCTCGTTGCTGCGAGCCACCGGCCACGACCCGGAACGGCTGTCGAACATGCTCGGCAGCGACGAGGCGCTGGACCACTGGCTTGGCGACAACGCGGGCGGGCCGATCGACTGGATCGCCCGGGGCGATTGGCGACGCGCGGTGGACGAGTCCCTGCGAGAGCCGCCCGCCGACCCCGGGGAACGAACCGCGGTGGCGCGGGCACTGCTCGACAGCGGCCGGTTCGAAGCTGCCTTGACTCTCGTTCAGCGTTCTCGCCGAACCGAAGACCTCCTGATCCGTCTCAAGGGTCTGGTGAGGATGGGTCGAGTGGCGGCGGCGCGCCGCACTCTCACCATGCTCCAGAAGCGCCGTCTCGATGCCGCAGCGAAGCTCGACAAGTGCGAGGAGGCGATCGGAATCCATGCGGCCGCGGGCCGCTCGGCTCAGCTCCGAGCTTGGGCAGAACGATCCTTGGAGGCCGCGGTCGGTTCGGTTGCCGGTCGAGGACGCGCTCTTGCCGCCTTGGCTATGCGCGAGGTCGGCGCGACCGGTGAACTGGATTCACCGGTCGACTCGAAACGGGAACCCGAAGACTGGACGTCGTGCTTGGCCCGGGCCCGTCTCGCGGTGGATCGAGGCCTCTTCGGAGAGGCCGATCAGGTGCTGAGGACTGCGCTGAGGCGGTTCGGGAGACACCTGCCGGTCCACGACCGCGCCAGCCTCTGGAACGAGATGGCAACGCTTCGGCTCGCGGTGGACGACTGTGCCGGCGCCGAGCGGGCGGCGCGCGTTTCCGTCCGGCTCTTCCGGTGTTGCGATGGCCCCGCCGGAAGGACAGAGGCGCACGGCAGCCTCGCCGAGGCCCGGATTCGCACCGGCCGTCTGGCCGGTCTTCGCGAGACGATCGAGAACCTGCGCCGCGAGAGCCTGATGGTCGGCAGCGTCGCCGGGTCCGTGGGGGCGCGGCAGCTGGAGACACGTCTGGACTTGGCGCAGGGTCGATGGGGCTCGGCCCTGGAGTGCTGCAGGACCGCCTTGGACGAGGCGCGAAAACGACAGTTGCGAGCGGGCCGGCTGCGGACCCTTCGCCTGCTGGCCGGCCGCGCCCTGGTTCACCTCGGTCGCAGCGAGGAGGCGAAGGAGCAGCTCCTGGCAGCGCTCCCGCCGCCAGTCGCGGACCGTTCGGACCGCGTACCGGCTGGAAGCGACGTTCTGCCCGCCGTGTTTCTTCTCGCCGGGCTTCGGGATGAGGCGCTGGTCGTTGGGGCCGGCACAGCCTGCGCCGGGCTATGGGACGCGGTCGGTGAGAACCGGCCCCCGAGCAGCGCCGATTGGCGACGACTCGAAGAGCAGGGCGCCTACCGCTGCGCACTGACGATCCATGATCTGGTCTGTTTGGGAGTCGAGACGGTCCCCGCGCGGTTGCTCGCATCGGCGGCGCGAACTCTGTCCGACGTGGGCGCCGAGGCGCTTGCGCAACGCGTGGACGGCGTCAGGCTGGGCCCGTGGAGAGCTCTTCGCGCCTTCCTCGATGCTGAAGAAGCCGACTCGCGGGCGCTCCGTTCGTTGCTGTCCGCGTCCGGTCTCCCCGAGGCCCGCATCGCGGTCCACGAGTCCAGCGGCGCGGGAAGGTCGGACAGGCCCACGGAAGTTCTGCTGGCGGGGCCCGGCGGCCGGGAACAGTTCTCGGTCGGCGTGCCGGCCGGCAGGCTGGTACTCAGTGCGGACCGCATCGATGAGCCGGCGCGCGCCCTGCTGACCGTGATCGCAGGCCGCGCACCGGAAGCGTCTCATCGTCGCCGTGACGTCCTGGAATTGGCGGAGGCGAGAAGACCGGCGATGGGCGGCATGATCGGCCGAAGCAAGGCGCTGACGACGGCCCAGGAGCGCGTCAGGAAGTTGGCACTGCACGATCTGCCCGTGTTGATTCTGGGCGAGTCGGGTACGGGAAAGGAGCTGCTGGCACGACAGCTTCATCATTCGAGCGCACGTGCCTCGGGTCCTTGGCTGGCCGTGAATTGCGCCGCACTTCCCGAAGGTCTCCTCCTGTCCGACCTGTTCGGGCATTTGCGCGGTTCATTCACCGGCGCCGACCGTGACCGGATCGGTGTGTTCGAGAGCGCTGAAGGCGGCACCGTGTTCCTCGACGAGATCGCGGAACTGCCATGGGCAGCGCAGGGCATGCTTCTGCGCATCTTGCAGGAAGGTGAGATGCGCCGGATCGGCGAGAGCCGTTCGCGGCGTCTGGACTTTCGTCTCGTTTCGGCGACCCATCGCGATCTCTCTGCAATGGTCGAAGCCGGTGAGTTCAGAGAGGATCTCTACTATCGGCTTCGGGTGGCGAATGTCGAGGCGCCGGCGCTGCGCGACCGCGATGGCGATGTGATGTTGCTGGCGCACCACTTTCTCGGGCTGTTCAGCTGTGACCGCGGGAGGCGACGATTCAGCGAGTCCGCCCGCCGGAAGATCCTCGACTATCCGTGGCCCGGCAATGTCAGAGAACTCAGAAACGCGATCGAGAGCGCGGTGGCTCTCTCCGACGAGCTCGAGATCACGGTCGAGATGCTGGGGCTTCCGGATGAGCCGCAGCGCCTGCATCAGGCCGAGGGCGCCAACTATCACAGGAAGCTCGAACAGTATCGACGTGGCCTGATCCGGAAGGCCCTCGCCGAGGCGGGAGGGAATCAGGCCCGTGCAGCGCGCGCATTGGGTCTGAGCAGACAGGCGCTGTCCTATCTGGTGAGAAAATCCAACTACGCTCTCTGA

Transcript

ANN37826-RA

Protein

Uniprot

Uniprot term	Description
P56266	Nif-specific regulatory protein OS=Klebsiella oxytoca OX=571 GN=nifA PE=3 SV=1
P03027	Nif-specific regulatory protein OS=Klebsiella pneumoniae OX=573 GN=nifA PE=1 SV=1
P14375	Transcriptional regulatory protein ZraR OS=Escherichia coli (strain K12) OX=83333 GN=zraR PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02954	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan
PF00158	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002078	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002197	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR025944	Conserved_site	Sigma-54 interaction domain, conserved site	Interproscan
IPR025943	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR025662	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan