Gene detail

Detailed information of ANN37875-RA in Montipora grisea

Genomic Location: Scaffold_983__1_contigs__length_65588:45247...49466
NR annotation: MCB9754440.1, elongation factor 4 [Myxococcales bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN37875-RA

ATGAACAAGCCGTCCCAAGCCTCCGTGCGCACGCCCCAGCAGAACATCCGAAGCTTCTGCATCATCGCCCATATCGATCATGGGAAGAGCACCCTCGCCGATCGACTGATGGAGGCCACCGGCCTGCTGGGTGAACGCGACAAGACTGCCCAATACCTCGACCGGATGGACATCGAGCGCGAACGCGGAATTACGATCAAGGCCCAGGCCGTCCGCATGCGCTACGACTACGATGGCGAGACCTACGAGCTCAACCTCATCGACACGCCCGGACACGTCGACTTTGGCTACGAAGTCTCCCGTAGCTTGTCGGCCTGTGAGGGGGCCTTGCTGGTCGTCGATGCTGCCCAGGGGGTTGAGGCACAAACCCTCGCCAACGTCTACATGGCCCTCGATGCCGACCTCGAAATCATCCCGGTGATCAACAAGATCGACTTGCCGGGCGCCGAGATTGACCGCGTCAAAGAGGAAATCGAAGAAATGGTGGGCCTCGACGCCAGCTCGGCGATTTTGTGCTCGGCCAAAACCGGGGTGGGTATTCCAGATGTCCTAGAGGCCATCGTCGCCCTGATCCCAGCGCCCAAGGGCAATGTCGAAGCTCCGCTCAAGGCACTCATCACCGATAGCTGGTGGGATGCCTACAAGGGCGTTATTTCGATTATCCGGGTGTTTGAGGGCAGCATCCGCGCCCGCGAGAAGGTCCGGTTTTTAGCCACCGACAAGACCTACGAGGTCCTCGATGTCGGTGCATATGCACCTGAGGCAACCTCGCTTCCAGAAATCGCCGCGGGCCATGTCGGCTACCTTATTTGTAACGTCAAGGAAGTCGCCGACTCAAAAGTTGGCGATACCATCGCGATGGCGAGCGACGAAACAGCCGAGGCGCTCCCGGGGTTTCAAGAGGTCCAGCCAATGGTGTTTGCTGGGGTGTTCACCAGCGACAACGGCGACTACCCGGTGCTGCGCGACGCCCTCACCAAGCTCAGCCTCAACGACGCCAGCCTGACCTGGGAGCCCGAGTCGTCGAGTGCCCTGGGGTTCGGTTTTCGCCTCGGATTTTTGGGCCTCCTGCACATGGAGATCATCCAGGAACGGCTCGAGCGCGAGTACAACCTCGACATCATCACCACCGCGCCGTCGGTGAAATATCGCGTCTTTTACAAGGACGGCACCGACGAGATCATCGACAACCCGGCCAAGATGCCCGACCCCGGCGGTTTTGACTACATCGAAGAGCCGATGATCCTCTCGCGGATCCAGGTGCCCGAGGAGTTTTTGGGCGCGATCATGAAGTTGTGCCAGGAGCGGCGCGGGATCCAAACTGACCTCAAGTACATGACCTCAACCCGCACACAGGTGACCTACGAGTTGCCGCTGGCCGAGGTCGTGTTTGGGTTTTACGACCAACTCAAAAGCATCAGCCGCGGCTACGCCAGCCTCGATTACGATGTGGCCGAATACCGCCGTGCCGATCTCGTACGCCTCGATCTGCTCGTCAACGGCGAACGCGTCGACGCACTTTCACTCATCACCCACCGCCAAAACGCCTTCAATCGCGGGCGCGACCTGTGTGTGAAGATGAAAGAGGAGATTCCGCAGCAGCAGTTTGAGGTCGCCATTCAGGCGGCGATTGGCAGCAAAATCGTGGCCCGTACCAACGTCAAAGCGCTGCGCAAGAACGTGCTTGCCAAGTGCTACGGCGGCGACATTTCGCGTAAACGCAAATTGATTGAGAAACAAAAACGCGGCAAGCGACGTCTCAAGGCAGTGGGCAACGTGAACAGCGTGAGCGACCAAAATCCCGACGCAAACAGCAAGCCCAAAAAGCCGGCTGCGCCCCCAAAGCCGCTCACCGATCGCCAGGTTAAGGCCGGTGCTGCCGAGCTTTTGCGCGAAGCAAAACGGATCCTAAAAAAGTACCGGCAACGGATAGCTCCCGAGCCGGTTGCCGCGATCGAAGCGTCGACCAACAACCTCGCCAAGTACCGCAGCGATCGCAACTGGAACGCCGCCCGCGGAGAACTTGAACGCCTCGACGAATTGTTGCATCAGCATGCATCCTTCGCCCGCAAGGGACTCATCCGCGAACTCAGCGAAAATGTCTCATTGGCCATCCTGTTTGCCCTGGGGTTGCGCTCGTGCTTCTACGAGCCGTTTAAAATCCCCAGCGGCTCGATGATGCCAACCCTTCGCTCCGGCGATCACATCTTTGTCAACAAGTTCACCTACGGCATCCAGTTACCGTTTACGACCACCGTGGTCGGCCAGTGGATGGGTGACATTCAGCCTGGCGATGTCATCGTATTTCGCTACCCGATCAACGAAGAAGAAGACTTTATCAAACGTGTAATCGGCACGCCGGGCGACACCGTGCGGGTCAACGGCGAGGAAGTTGCGATCCGCAGGGCAGGGGGCGAGACCTTTGAAGTCCTCCAGCGCAAGCGCCTCGATGACCCCTGCCTCGACGAAACGGGCGAGCAGGTCATCGGCCGCTGTGCCCTGTTTGAAGAAACACTCGGCGACAAGACTTATGTCGTCCGCTACACCTCGCCGGTCGACCCACGCACTGGTGGTCTGACCCGAAGAGCAGGTGAGTGGACCGTTCCCGAGGGCCACTACCTCGTGATGGGTGACAACCGCAACCAAAGCCACGACAGCCTCGCGTGGACCAAAACAGTCGAGGCCGTTGCTGCCGAAGGTGTACTTGCACCGAAGGACATGCGCGACCTGACAGCCGAAAAAATGTTTCGCCTGTCCCACCCCGACGACCGTTCACTGCGCGAAGTCGCCAACTACGACCACCTCGTGTACACAGCCGAGCACCGCTCGACCAAGCATATGCAAGAGTTGGAGCTTTGGCGTCAACCCAGCCTTGGGCGTGACATCGTGTTTGCGACCGCTGCCGAGAACATTGCATCGGCAAATGAAATTACATTTGAGCAATTGATGGAGGGCGATGCCTTCCTAGACACCCACGAGGCCGACCGCCAAAAGGTGCTCGACGCAGCCGCCAAGGTCGGCAAAATGGTCGGCCGGATCGACCGTTTAGGCGGCTATCAAGTCGCTCTCCGGCTCGACGAGGCCGATGCCGTGTTGACCATGCAATGTGGGCGCGGAGCCTGCCAAACAGACGGCGCCTTCGCCCAAAAGCTAGCCAAAACCGTCACCGAGTTCACCGGCAACACCCAAGAAGACGCCCGCAAGCTACTCAGGGGCAACGCCGCGCGCTACCAACAAAATTGGACCAGCCGTGGGCTCGAACGCGACAAGTTTTTAGATCGAACCTTCACGGCCAATGGCGAAGTTGCCAACGACAAAAAAAATCGCGTGCGGCTGCGGGCGTGGCGAGATAGCCAAGAGCACGAGAACTTTGTCTACGATGCTGCGATCTTGTACGCACAACAATCGTCAACCTCGGGCGAAGACAACTCAGACTCGCCGGAGCTACAAGCAATCGATAGTTTGAGTAGCGACGCGCGGGCGATCGAAACCGACGACGGTGTGGTGCTTGTCAACCGGCTGCCAAGCGACGGCATGATTTACCTGCTCGAGTGCGGAACTTCGCGGTGTGGGTCGGTCGACGAAGCAGTTGCACTTGCAACAACCATCGACCAAAAAGCTCCGGCAGCAGCCCGAGATGCACGAAGGTTGGCAGAGTTGCTAGTCGCCGCGGATATTGGCTGGAAAGAGGCTGCGCCACCGGCTGTCGAACCGAGGCGCTACGAGTACGACCGCATGTTGCTCGAAGGCACGGTCCAGGCCGGCGAGTACAGCCTCGACCTTTATGTGTGGCGAAAACCGCCCGAGGGCCTCGACGCCAAGGTCAAGGAACTCGCCGACGATGCGGCTGCCCAGCCCGACGGTGCGGTTGCTGAGGGCGGCTACAGCACGGCGACAGACCGCGAATACATCGATGTATTTGCCATCCCAAGCGCCGAGTTGGTGATTCAGGTAAATTGCCGGTTCGGCCTGTGCCCAAGCCGCGAAAGCGCCGTAGGGTTGGCACGCCGAGCACTCGAAAAAGGTCGCGACACGACCAACTACATCGACGAAAACGCGGAGCGGCCATATCCGTTTGTCCCACGCGGCAATGTCAAGGGCCGGGCCGACCGAATTTGGCTTCCGACTTCCCGGTTTTGGTTGCCGATTCGCTAG

Transcript

ANN37875-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1D6M1	Elongation factor 4 OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=lepA PE=3 SV=1
B8JAF3	Elongation factor 4 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) OX=455488 GN=lepA PE=3 SV=1
B4UDQ7	Elongation factor 4 OS=Anaeromyxobacter sp. (strain K) OX=447217 GN=lepA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002510 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF00679 all species →	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF06421 all species →	LepA_C	GTP-binding protein LepA C-terminus	Family	Interproscan
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF10502 all species →	Peptidase_S26	Signal peptidase, peptidase S26	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038363 all species →	Homologous_superfamily	LepA, C-terminal domain superfamily	Interproscan
IPR035647 all species →	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR019756 all species →	Active_site	Peptidase S26A, signal peptidase I, serine active site	Interproscan
IPR006297 all species →	Family	Elongation factor 4	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR000223 all species →	Family	Peptidase S26A, signal peptidase I	Interproscan
IPR019533 all species →	Domain	Peptidase S26	Interproscan
IPR019758 all species →	Conserved_site	Peptidase S26A, signal peptidase I, conserved site	Interproscan
IPR000640 all species →	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR013842 all species →	Domain	GTP-binding protein LepA, C-terminal	Interproscan
IPR035654 all species →	Domain	Elongation factor 4, domain IV	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR031157 all species →	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR019757 all species →	Active_site	Peptidase S26A, signal peptidase I, lysine active site	Interproscan
IPR036286 all species →	Homologous_superfamily	LexA/Signal peptidase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43512 all species →	TRANSLATION FACTOR GUF1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan
GO:0006465 all species →	Biological Process	signal peptide processing	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0045727 all species →	Biological Process	positive regulation of translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN37875-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →