Detailed information of ANN38314-RA in Montipora grisea

Genomic Location: Scaffold_5267__1_contigs__length_29852:10105...11616
NR annotation: GJM39068.1, DNA topoisomerase (ATP-hydrolyzing) [Acidimicrobiales bacterium]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P21558DNA gyrase subunit B OS=Haloferax lucentense (strain DSM 14919 / JCM 9276 / NCIMB 13854 / Aa 2.2) OX=1230452 GN=gyrB PE=1 SV=2
D4GZ01DNA gyrase subunit B OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) OX=309800 GN=gyrB PE=1 SV=1
A5TY73DNA gyrase subunit B OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) OX=419947 GN=gyrB PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0233927 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01751
all species →		ToprimToprim domainFamilyInterproscan
PF00986
all species →		DNA_gyraseB_CDNA gyrase B subunit, carboxyl terminusFamilyInterproscan
PF00204
all species →		DNA_gyraseBDNA gyrase BDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006171
all species →		DomainTOPRIM domainInterproscan
IPR013759
all species →		Homologous_superfamilyDNA topoisomerase, type IIA, subunit B, C-terminalInterproscan
IPR013760
all species →		Homologous_superfamilyDNA topoisomerase, type IIA-like domain superfamilyInterproscan
IPR002288
all species →		DomainDNA gyrase B subunit, C-terminalInterproscan
IPR020568
all species →		Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR018522
all species →		Conserved_siteDNA topoisomerase, type IIA, conserved siteInterproscan
IPR014721
all species →		Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR001241
all species →		FamilyDNA topoisomerase, type IIAInterproscan
IPR000565
all species →		FamilyDNA topoisomerase, type IIA, subunit BInterproscan
IPR013506
all species →		DomainDNA topoisomerase, type IIA, subunit B, domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45866
all species →		DNA GYRASE/TOPOISOMERASE SUBUNIT BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003918
all species →		Molecular FunctionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02470gyrB; DNA gyrase subunit BEC:5.6.2.2
DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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