Genomic Location: Scaffold_8035__1_contigs__length_23510:18589...20230
NR annotation: HBP15100.1, L-aspartate oxidase [Gammaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN38554-RA |
| Transcript |
| ANN38554-RA |
| Protein |
| ANN38554-RA |
| UniProt accession | Description |
|---|---|
| Q51363 | L-aspartate oxidase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=nadB PE=3 SV=1 |
| Q8XWM7 | L-aspartate oxidase 1 OS=Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000) OX=267608 GN=nadB1 PE=3 SV=1 |
| Q9KPA4 | L-aspartate oxidase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=nadB PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0013170 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02910 all species → | Succ_DH_flav_C | Fumarate reductase flavoprotein C-term | Domain | Interproscan |
| PF00890 all species → | FAD_binding_2 | FAD binding domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027477 all species → | Homologous_superfamily | Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily | Interproscan |
| IPR036188 all species → | Homologous_superfamily | FAD/NAD(P)-binding domain superfamily | Interproscan |
| IPR005288 all species → | Family | L-aspartate oxidase | Interproscan |
| IPR015939 all species → | Domain | Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal | Interproscan |
| IPR003953 all species → | Domain | FAD-dependent oxidoreductase 2, FAD binding domain | Interproscan |
| IPR037099 all species → | Homologous_superfamily | Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42716 all species → | L-ASPARTATE OXIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008734 all species → | Molecular Function | L-aspartate oxidase activity | Interproscan |
| GO:0009435 all species → | Biological Process | NAD biosynthetic process | Interproscan |
| GO:0034628 all species → | Biological Process | 'de novo' NAD biosynthetic process from aspartate | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
ANN38554-RA.Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
