Gene detail

Detailed information of ANN38708-RA in Montipora grisea

Genomic Location: Scaffold_6039__1_contigs__length_27989:7072...9069
NR annotation: MCP4464352.1, ABC transporter ATP-binding protein [Planctomycetaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN38708-RA

ATGAAGAACCTTCGAAGAGCGCTGGGAATGGCGCTTCGATACAAATGGTCGATTGTGACCTCCACGATATGCGCGTTTTTGATTGCGATCCTGTGGGGCGTAAATATCGGTGGTGCATTGCCAATCATCGAAATCGTTTTCCGCGGCAACTCTTTGCACGACGTCATCGACGAGCGAATCGAGAATTCAGAACAGGCCATTGGAAAACTGAATAAACAGATTCAGGATTATCAATCGCAAAAAGCCGCAGCCAATCCGACCGAATCAGAACGCCTGGATCGAAGAATCCGTTTGTCGCAAGCAGCCATCTCTGATGAAGAGGCGGCAATCGCCCGCACCAAATGGTTTGAGCCCTGGATTAAGAAAAACACGCCCAAGGATCCCTTTCCAACATTGATCCTTGTCTTCGGTTTGTTGTTTGGATGTACGTTGCTGCGCTGTTTCTTTCTGGCCGTCAATATGTACCTTGTGACTCGAGTTGGTCAACGGACGGTACTCGATATTCAAGATCACCTGTTTCGTAACACGATGAAGATGGAAGTGCACGAATTATCTGGTGTTCGTGGAACTGGCGATTTGATCAGTCGAATTCGCGGCGAAACAGCAGCAATTGCCAGCGCCATCACGACCCTGTTTGGCAAGACTCTTCGTGAGCCTTTGAAGATGGGCGCCTGCGTGGCCGGCGCAGCGATCGTAAACTGGCGCCTGTTGATCTTGTCTTTGGTCGTGGTTCCAGTCGCTGGGATCATCATGTTGACGATTGCCCGCTGGACGAAAAAGGCTCACAAGAAAGCTATTGAAGAGTCCGCTGAGTTACTGAACCGTTTGTTCCAGGCCGTTTCGTATATGCGTTTGGTAAAGGCGTTCAATATGCAGAAACACGAACACCATAGATTTCGGGAAACGGCTACGGATGTTTATCGAAAACAGATGAGAATTTCGTTGTTCAATGCACTGGGTCGATCCAACAGCGAGATTTTGGGTGTCGCGATTATTTCGCTGTCTGCCCTCGTCGGTGCTTATTTAGTTCTGGAATCGCAGACGCATTTGTTCGGAGTAAAACTGGCCAGCAATCAAATGACGCCCAGTGAAATCATGGTGTTCTTTGCATTCCTGATTGGAATTGCCGATCCACTTCGAAAAATGGGTGATGTGTATAACCAGATTCAATCGGGAGCGGTTGCTGCCGATCGAGTCTTCCCGTTGTTTGATCAAACGCCCCAGGTAGGCGACCCTGCCAATCCAAAGGCGATCGACAAAGAGAAAGCCACGCTCAGCTTTGAAGATATTCGGTTTGGGTATGAAGAAAATGAAGACGTGCTGAAAGGTCTATCTGTCACGATCCCGACTGGGTCTTCGTTGGCGATTGTCGGCGCAAATGGTTGTGGCAAGAGTACGTTAATCAATCTGCTCTTGCGATTCTTCGATCCAAGATCCGGCAGTGTCAAACTTGGTGATCACGACATCCGCGATTACCGTGTTGGAGATCTCCGCGAATCCATCGGCTACGTTACTCAACAAACCATGCTGTTTAACGACACGATCGCCAACAACATTCGATATGGATCACCGGATGCCACTTTGCAGCAGGTGATGGTGGCGGCACGACAGGCACACGCTCACGAATTCATTTCCGAATTGCCCGATGGATACGACGCCAGCGTCGGCGAGCATGGCGGCAAGCTATCCGGTGGTCAACGACAACGGCTGGCCTTGGCTCGCGCAATTTTGAAGAACGCTCCGGTGTTGGTCCTGGACGAAGCAACCAGTCAGATTGATCCAGAGAGCGAGCGGCTGATTCACAATTCATTGGCTGATTTTATTGCAGGTCGAACCACATTGATGATCACCCATCGATTGTCGACGTTGGATTTGGCCGATCGAATTCTTGTTATGCACGACGGACAAGTCGTTGATTGTGGTACCCACGCCGAGTTGATGTTGCGGTGTCGACCCTATCAACGATTGCGAGCAACCGAAATGGAGGAGGCTGCTTAA

Transcript

ANN38708-RA

Protein

Uniprot

Uniprot term	Description
Q6AJW3	ATP-dependent lipid A-core flippase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) OX=177439 GN=msbA PE=3 SV=1
Q2LVL0	ATP-dependent lipid A-core flippase OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=msbA PE=3 SV=1
Q21NS8	ATP-dependent lipid A-core flippase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=msbA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR039421	Family	Type 1 protein exporter	Interproscan
IPR011527	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR036640	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24221	ATP-BINDING CASSETTE SUB-FAMILY B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0034040	Molecular Function	ATPase-coupled lipid transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11085	msbA; ATP-binding cassette, subfamily B, bacterial MsbA	EC:7.5.2.6	Transporters	ko02000	deepkoala