Gene detail

Detailed information of ANN38765-RA in Montipora grisea

Genomic Location: Scaffold_7284__1_contigs__length_25166:19206...21063
NR annotation: MCC7121054.1, sigma-54-dependent Fis family transcriptional regulator [Gammaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P26047	Signal-transduction and transcriptional-control protein OS=Clostridium beijerinckii OX=1520 GN=stc PE=4 SV=3
O31551	Acetoin dehydrogenase operon transcriptional activator AcoR OS=Bacillus subtilis (strain 168) OX=224308 GN=acoR PE=2 SV=1
O85057	Limonene hydroxylase OS=Geobacillus stearothermophilus OX=1422 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00158	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF01590	GAF	GAF domain	Domain	Interproscan
PF02954	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR029016	Homologous_superfamily	GAF-like domain superfamily	Interproscan
IPR002078	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025662	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR003018	Domain	GAF domain	Interproscan
IPR002197	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR025943	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21405	acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR	-	Transcription factors	ko03000	deepkoala