Gene detail

Detailed information of ANN38770-RA in Montipora grisea

Genomic Location: Scaffold_1936__1_contigs__length_47779:16432...17773
NR annotation: NBC17367.1, threo-3-hydroxy-L-aspartate ammonia-lyase [Bacteroidota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36007	L-threo-3-hydroxyaspartate ammonia-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SRY1 PE=1 SV=1
A4F2N8	L-threo-3-hydroxyaspartate ammonia-lyase OS=Pseudomonas sp. OX=306 GN=thadh PE=1 SV=1
O59791	Serine racemase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sry1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002523 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14242 all species →	DUF4342	Domain of unknown function (DUF4342)	Family	Interproscan
PF00291 all species →	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036052 all species →	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR025642 all species →	Domain	Domain of unknown function DUF4342	Interproscan
IPR001926 all species →	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan
IPR000634 all species →	Binding_site	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43050 all species →	SERINE / THREONINE RACEMASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0003941 all species →	Molecular Function	L-serine ammonia-lyase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0018114 all species →	Molecular Function	threonine racemase activity	Interproscan
GO:0030378 all species →	Molecular Function	serine racemase activity	Interproscan
GO:0070179 all species →	Biological Process	D-serine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22589	thadh; threo-3-hydroxy-L-aspartate ammonia-lyase	EC:4.3.1.16	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.