Gene detail

Detailed information of ANN38809-RA in Montipora grisea

Genomic Location: Scaffold_5197__1_contigs__length_30046:5456...6934
NR annotation: MYF58062.1, exodeoxyribonuclease III [Gammaproteobacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09030	Exodeoxyribonuclease III OS=Escherichia coli (strain K12) OX=83333 GN=xthA PE=1 SV=4
P0A1B0	Exodeoxyribonuclease III OS=Salmonella typhi OX=90370 GN=xthA PE=3 SV=1
P0A1A9	Exodeoxyribonuclease III OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=xthA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0016725 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF01557 all species →	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037493 all species →	Family	Exodeoxyribonuclease III-like	Interproscan
IPR004808 all species →	Family	AP endonuclease 1	Interproscan
IPR036663 all species →	Homologous_superfamily	Fumarylacetoacetase-like, C-terminal domain superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR020848 all species →	Conserved_site	AP endonuclease 1, conserved site	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR011234 all species →	Domain	Fumarylacetoacetase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43250 all species →	EXODEOXYRIBONUCLEASE III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008311 all species →	Molecular Function	double-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN38809-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.