Gene detail

Detailed information of ANN38867-RA in Montipora grisea

Genomic Location: Scaffold_4405__1_contigs__length_32367:2780...5618
NR annotation: MBI2095202.1, carbamoyl-phosphate synthase large subunit [Candidatus Omnitrophota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN38867-RA

ATGCCCCGTCGCGACGACCTGGAGCGGGTGATGGTGCTGGGCGCAGGCCCCATCGTCATCGGCCAGGCATGCGAGTTCGACTACTCGGGCACGCAGGCGTGCAAAGCGCTCAAGGAAGAGGGGTTCGAGGTGGTGCTGCTGAACTCCAACCCCGCCACCATCATGACCGATCCGGATCTGGCCGATCGCACCTACGTCGAGCCGATCAACCTGTGGGCATTGGAGCGCATCCTGGAGCGCGAGCGCCCCGACGCCGTGCTTACCACCCTGGGCGGCCAGACGGCGCTCAACCTGGCGGTCGAGGCGGCCGAGGACGGCCTGTTCGACCGGTTCGGAGTGGAGATGATCGGCGCCGACCTGGCCGCCATCCAGGTGGCCGAGCGCCGAGCGGACTTCCGCCGCGCCATGGAGGAGATCGGCTTGGCCGTGCCGCGTTCGGCCATCGCCGGCAGCCTGCAGGCGGCGTGGGACGCCGTGGCACAGGACCGGATTTCCCAGCGTGGTGCGTCCCAGCTTCACGCTGGGCGGCACCGGCGGCGGCGTGGCGCGGACGCCGGAAGATCGGTGATCGGCTGGAAGGAGTTCGAGCTGGAGGTGATGCGCGACGTGAAGGACAACGTCGTCATCATCTGCTCGATCGAAAACGTCGATCCGATGGGCGTGCACACCGGCGACTCGATCACGGTGGCGCCGGCTCAGACCCTGACCGACCGCGAATACCAGCTCATGCGTGATGGCGCCATCGCCTGCATCCGCAAGGTGGGCGTGGAGACCGGCGGCTCCAACATCCAGTTCGCGCTCGATCCGGCGACCGGCCGCATGGTGATCATCGAGATGAACCCGCGCCTGTCGCGATCGTCCGCGCTCGCCTCCAAGGCGACCGGCTTTCCGATCGCGAAGTTCGCGGCCAAGCTCGCAGTCGGCTACACCCTGGACGAGATCCCCAACGACATCACGCGCGAGACCCCGGCCAGCTTCGAGCCCACCATCGACTATTGCGTCGTGAAGATCCCGCGTTTCGCATTCGAGAAGTTCCCAGAGGCGGATCCCACCCTCACCACCCAGATGAAGTCGGTGGGGGAGGTGATGGCCATCGGCCGCACCTTCACCGAAGCGCTGCAGAAGGGCATGCGCGGGCTCGAAATCAAGGCGGACGGGTTCCAGCTTCGCGACGCCTACCGCGGACTGGACAAGGCGGCGCTGCTCGAGGCGCTGCGCACGCCCAACGCCGAACGGCTGTTCCAGCTCCGGCATGCCTTCGAGCGGGGCGCGACGGTAGAGGAGCTGTACCAGGCGACCGCCATCGACCCCTGGTTCCTGGCCTCGCTCGCCCGGATCGTCGAGCAGGAGCGGCGGCTGGCCGGCACCCTTGACGGGGAAGACGGCGACGGCCGTCGGCAGCTGATCGCCGCCAAGCGCTTCGGCTTCTCCGACGCCCAGATCGGCGCCGCGCTCGGCCAGAGCGAAGGCCAGGTGCGCGCGCGCCGCAAGGCGCAGGCGCCGGTCGACACCTGCGCGGCCGAGTTCGAGGCATATACTCCTTACTACTACTCCACCTATGAGGACGAAGACGAGGTTCCCGCGTCCGACCGCCGACGCGTCGTCATCCTGGGCGGCGGCCCCAACCGGATCGGGCAGGGGATCGAGTTCGACTACTGCTGCTGTCAGGCCGCGTTCGGCTTGGCCGACGCCGGTTACGAGTCGATCATGGTCAACTGCAACCCGGAGACCGTCTCCACCGACTACGACACCTCCACCCGCCTCTACTTCGAGCCGCTCACCCTGGAGGACGTACTCAACATCGTCGACAAGGAACGACCCGACGGAGTCATCGTGCAGTTCGGCGGGCAGACGCCGTTGAATCTGGCCGGCGCCCTGGAGGCCGCCGGCGTGCCGATCGCGGGCACCGCCTGTGACGCGATCGACCGGGCCGAGGACCGCTCCCGGTTCGCCGAGCTTCTGTCGGGATTGGGCCTGGTGCAGCCGCCGAACGGCTCGGCCGTCTCCGTGGATGCCGCCGAGCGGGAGGCGCAGCGGATCGGCTACCCGGTGCTGCTGCGCCCGTCGTACATCGTCTATGACGCGGAGTCGCTGCGCGACTACGTGGCGCGCGCGGTGGAGGTCTCAGGCGATCGGCCGGTGCTCATCGACAGCTTCCTGGAGGGCGCCACCGAGGTGGACGTCGACCTGATCGGCGACGGCGCCACCTGCCTGGTCGGCGGAGTCATGGAGCACATCGAGGAGGCGGGGGTGCACTCGGGGGACAGCGCCTGCTGCCTGCCGCCGCACTCGCTGTCGGAGGCGATCGTCGACGAGATCAAGCGACAGTCGGTGGCGATCGCCTGCGAGCTGGGCATCGTCGGCCTGATGAACGTGCAGTTCGCCGTCAAGGACGGCGACGTCTTCGTTCTGGAGGTGAACCCGCGCGCCTCGCGTACGGTTCCGTTCGTATCCAAGGCGATCGGCGTGCCGCTGGCCCGGCTTGCGGCCAAGGTCATGGTCGGCGTGCCGCTGGCCGACCTGGACGTGCGCATACCCACGCGGCCGGATCGCTACGCGGTCAAGGAAGCGGTGTTGCCGTTCAGCCGCTTCCACGGCATCGACGTGATCCTGGGGCCGGAGATGAAGTCGACCGGCGAGGTCATGGGCTCCGACGACCGCTTCGGCAAGGCGTTCGCCAAGGCGCAGATGGGTGCCGGCTCGCCGCTGCCGGTGGCGGCAACGCCTTTCTGA

Transcript

ANN38867-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O28994	Carbamoyl phosphate synthase large chain OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=carB PE=3 SV=1
Q7UJ58	Carbamoyl phosphate synthase large chain OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) OX=243090 GN=carB PE=3 SV=1
Q8RSS3	Carbamoyl phosphate synthase large chain OS=Halomonas eurihalina OX=42566 GN=carB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001107 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02787 all species →	CPSase_L_D3	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005480 all species →	Domain	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	Interproscan
IPR036897 all species →	Homologous_superfamily	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR005483 all species →	Domain	Carbamoyl-phosphate synthase large subunit, CPSase domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11405 all species →	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004088 all species →	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006541 all species →	Biological Process	glutamine metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01955	carB, CPA2; carbamoyl-phosphate synthase large subunit	EC:6.3.5.5	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.