Gene detail

Detailed information of ANN39009-RA in Montipora grisea

Genomic Location: Scaffold_9793__1_contigs__length_16336:9635...11864
NR annotation: CAH3161596.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN39009-RA

ATGGCCGAAGCTCTACAGTTGAAAATGGTTGACCGCCTCAGCTTGGAGAAACTCGGCGAGGAAATCACCTGCTCGTATTGCCACAGGCATTTCTCCGACCCTCGGGTCCTTTCCTGCTGTCACTATTTCTGCAGAAGCTGCGTGGAGCAGCTAGCTACGGACGGGCGGAACGACGACGGGACTTTCACATGTCCAGAGTGCGGCATTGAGGCGGAAACTCCGTACACTGATTTGAAGCGGCTGCCAGTAGCGCACTTTGTCAACCGCTTGAAGGAATTGTATTCACAAGTGGCGAAATTGGAAGAGACGATGGAGTCACCGTGCGAAATGTGTTCGGCGGGTAAAGCCAGAGAATTCTGCTTGCAATGCGCAGAGTTTGTCTGCAGCGAATGCGCAAGCGCACACCGTAAGATGAAAATAAAATTCCCAAATCATCGTGTCCTCACGTTGGCCCAGCTGAAGGTGGGAGGAGCTAACACTCTCCCGACAAAGCCAGCTCCTCCTGGCAGGTGTTCAGAGCATGAAGAACCTCTGAAGCTCTTCTGCTTCGACTGCTGTTGTCTGATCTGCCAGGACTGCATCATGATTGACCATTCAGAGCATCGCTATGAATTCCTAAAGAAGTCTGCATCATATTGTAGGCAAGCACTCACTGGGAACCTTGTACCTCTCAAAGCACTTCAAACCGAGATAATGGAAGCTGGAAAATCCATCCAGGATGTGAAACGCAATGTTTCAGTCCAGGGAGCATACATATCTGAGCACGTGGAGGAAAAGTTTCGGGAAATATTTGAAGCACTCAAAAAACACAAGCAAGAACTCCTATCAGAGTCCACCCGGATCATCCGAGAGAAGATGGAGACACTAGATCTGCAGGAGAAAGAACTGCAAGCAGCTGTGGGACAGATTGAGAGGGTGATTCAGTACGCTGAGAAGACTCTGGAACTGGTTACTGACGAGGAAATGGTCACACAGTACCAGTTACTACTAACCCGAGCAGACAAAGAAGTAAAGAAGCAAAAAGGGTTGAGTCTTATTCCATCAGAAGTGCCTAATCTTGCTGTGAGTGTCAACTGCATAGAGGAGGTCGTGCAAGCATGCCAAACAAACGCAAAGGTTTATCTCTTTCCTATTCAGAGCTCAGACATTCACACAACAGACATTGGTGTGACAACGACACATTACATCATTGACCACTCGGATGAGAGCAACTGTGAACCAGTGGCAGTTAACGCTTGCCTGAAGTCACTAGTTGATGGGTCTTCCATCCCTCTCAAGGTCACAATGACTGGGAAAGGTCTATTTGAGGTCACCTACACTCCAAAGATTCGTGGGAGGCATGAACTCACAGTGAAAATTGGAGAAAGAATGATAAATGGGAGTCCATTCCTGGTTTTTGTCATGATCCCTCCCTCACAGCTGGGAGAGCCAGTAATGGCCATACAAAACCTGACACATCCTTATTCTGTGGCCTTTGATGCTGAGCAACATCTCCTAGTGACAGAATCTGGTGGGCAGACCGTCAAGGTGTTTAAAAAGGATGGACCAAGCATTGAAATGAAAGAGTTTGCTAAGCACAAAATTGAGAGCCCAACAGGTCTGGCTTTGGATGCAGACGGAAACATCTATATTGCCAATGTGAGCAGCCACACTGTCTCCAAGTACAACCGTGAGGGACAGTGCATCAAGGTGGTTGGGAGAGAGGGAAGCAGAAGTGGAGAATTCAGCCATCCATCTGGGCTAGCTGTGATTGACCAAAACCTGTACATTTGTGATCGCAACAACAGCCGCATTCAAGTCTTCAGCTGTGACCTCGAGTTCCTCCAAAGCTTTGGCTCTCATGGAGCCCAAAATGGAGAGCTCCACTGGCCATATGAGGTAGTAGAGGGAGAAGGAGGCCTTGTCTATGTCACAGACTGTGACAATGACCGAGTCCAGACCTTTGATAGGGAAGGACACTTTGTACATGCATTTAACACTCGTGGAGGTGGCAGGAGCTCCTTGAAACGTCCTGTTGGGGCCTGTCTGGGGGACCACCTGCTATACGTCACAGAGTACACTCACCATTGTGTGTCGGTATTCCATCCTGATGGAGAGTACATTGGATCTTTTGGTAATTATGGATGCAAGAAGGGGGATTTCTGTTACCCAGTTGGCATAGCGATAGATTTGGATGGTTTTGTATATGTCTGTGATCAAGGCAATAACAGAATACAAGTGTTCTAA

Transcript

ANN39009-RA

Protein

Uniprot

Uniprot term	Description
Q99PP7	E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus OX=10090 GN=Trim33 PE=1 SV=2
Q9UPN9	E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens OX=9606 GN=TRIM33 PE=1 SV=3
Q56R14	E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan