Gene detail

Detailed information of ANN39014-RA in Montipora grisea

Genomic Location: Scaffold_7945__1_contigs__length_23704:14701...18161
NR annotation: WP_279382642.1, sigma 54-interacting transcriptional regulator [Acanthopleuribacter pedis]
Species abbreviation MGRIS · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN39014-RA

ATGTTGAATGAAATCGAGTTGCCCGAGGATCTCGAAAAAACCGCGACGGCAGGACCGGACCAGGTCAACCGGAAAATTCATGCGCTGGAGCTCCTCCTCGAGATCAGCCGTCAGGTTTCCACCTTGGACTATCGTGCGGTGCTCAAGCTGATCATGAAGTACATCATCAAGATGACCCAGGCACGGCGTGGGATGTTGATGCTTTCCCAACCGGACGGTTCCTTGCGGTTTGGATTCGCGGTGAATTTGGAGCGGGAGGAAATCGATAGCGAGGAATTCGAGATATCCCGTTCCATCGCGGAACGGGCGGTGGAGACGCGACAGGTAATGGTGGTCAAGAATGTGCCCGTCGGCAGCTTTACCGAACAACCCACCAGTTTCATCATGTTGGGGCTCAAGGCCGTGATGGCCATTCCCCTGATTTCCAAAGACCGCGTGGTGGGCGTGATCTACATCGATACGGATTCGGAAGATCACAAGATCACCGATGGCGACTTGACCATTTTCAAGGGCTTCGGCTCCCAGGCCGCGATTGCCATCGAAAATGCCAAGCTCCACAAAGACCTCCAAGAAGATTACCTCTACCTCAAACGCTCCATTGCCGGGGCTTCCGCATTCGACCAGATCATTTATCAGAGCCAGGCCATGCATCGGGTTTGCGAGGCCGTCAAACAGGTGCTGACCAATGATATTTCGGTCCTGATCATGGGAGGGACGGGGACGGGTAAGGAACTGGTCGCTCGAGCCGTCCATTACAACGGTTTGCGCAAGGATCGCCGGTTCCTGAGCCAGAATGCCGGTGCCTTGCCCGATACGATCCTGGAAAGCGAGTTGTTTGGCCACCGGCGAGGCTCTTTTTCCGGCGCGGTGGAGAACAAGGCGGGCCTGTTCGAGGTAGCCGACGGCGGAACCGTTTTCCTCGATGAAATCGGGGAGGCTTCACCCGCGCTCCAGGTCCGGCTGTTGCGTCTGCTGGAAACCGGTACCTTTCGGCGCGTGGGGGATACGGTCACCCGCAAGACCGATGTCCGGATCATCGCGGCCACCAATCGTGATCTGAAAAAAGAGGTGGCCGCGGGACGTTTCCGGGAAGATCTCTATTACCGGCTCAGTGTCTTTCCCATCGAGCTGCCGCCCTTGCGGGAACGGACCGAGGACATTCCCCTGTTGGTCCGTCATTTCATCAACGATTACAACCGCGAGTTGGGCAAGGACGTGACCTCGATCCCAAAGGCGCTGATGAATGATCTGATGGACCGGGAATGGAAAGGCAATATCCGGGAGCTCCGCAATGTGGTTCACCGGCTGATGGTGTTGACGCCTCCCGACTCGAACAAACTGTTTTTCGAGGGGGTGGAACCTGATTCACCGGACCCAGCTTCCGATCCCATTTCAGAAGCCGGCACCAAGCGGGATGAAAGCACCATCAGGTCCCTGGAAGAAGTGGAACGGGATCACATTCGCTACGTGTTGGAACAGACAGGCGGGATCATTCCCTGTTCTCCCGCCTTCGGCTCCCAAGCCGCGATTGCCATTGAAAACGCCCGGCTTCACGAGAATCTCCAGGAGGATTACTTTTTTCTGAAACGCTCCGTTGAGGGTACTTTCAGCTTCGACAAGATCATCTACCGGGGCCGGGCCATGCATCGGGTGTGTGAAGCCATCAAACAGGTGTTGGAAAACGATATCACGGTCCTGATCCAAGGGGAGACGGGGACCGGTAAGGAGTTGGTCGCCAGTGCCGTTCACTATAACAGCCGCCGCAAGGATCGCCGGTTCGTGAGCCAGAACGCGGGTGCCCTGCCGGACACCATTCTGGAAAGCGAGCTGTTCGGTCACAAGCGGGGTGCCTTTTCCGGAGCCGTGGAGAACAAGGCGGGGTTGTTCGAGATCGCGGACGGCGGGACGGTGTTTCTCGATGAGATCGGGGAGGCTTCGTCCGCGTTGCAGGTAAGGTTGTTGCGATTATTGGAAACGGGCACCTTCCGGAGGGTGGGAGAGACCGCCCACCGCAAGACCGATGTGCGGATCGTCGCCGCCACCAACCGGGATCTGAAAAAGGAAGTGGAGGAGGGGCGATTCCGGGAGGATCTCTATTATCGGTTGAGTGTGTTTCCGATCTTTCTGCCCCCCTTGAGAGAGCGGGATGAGGATATCCCGGTGCTGGTCAACCATTTCGTGCAGAGCTACAACCGGGAGCTCGGTCGTTCGGTGAAGTCCTTGTCCAAGGAAGCCATGGACCGGCTCATGGCGGGGAGTTGGAAGGGCAATGTACGGGAGTTGCGCAATACGGTCTACCGCATGATGGTTCTCACGCCGGAGGGTCAGGAGGTCCTGGAAGCCCGGGATCTCGGGATGGAGCCCGATGAAGATGGTTTGAAAAACGAGGCTCCCGCGAGTGGCGCCCGGGGGACGGGTACCATCAAAACCCTGGAGGAAGTCTCGCGGGACTATATTCTCGAAGTCCTGGACCTGGTGCACTGGAACCAGGCAAAAGCGGCGCGCTGTTTGGGACTCAACCGCAGCACCTTTCGTTGGCGGCTGAAAAAACTGGGAATCGAGCGAGCCTGA

Transcript

ANN39014-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09570	Nif-specific regulatory protein OS=Azotobacter vinelandii OX=354 GN=nifA PE=4 SV=1
P19323	Formate hydrogenlyase transcriptional activator FhlA OS=Escherichia coli (strain K12) OX=83333 GN=fhlA PE=1 SV=1
E1WAA4	Formate hydrogenlyase transcriptional activator OS=Salmonella typhimurium (strain SL1344) OX=216597 GN=fhlA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00158 all species →	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF02954 all species →	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan
PF13185 all species →	GAF_2	GAF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003018 all species →	Domain	GAF domain	Interproscan
IPR025662 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 1	Interproscan
IPR025943 all species →	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR002078 all species →	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR002197 all species →	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR029016 all species →	Homologous_superfamily	GAF-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071 all species →	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02584	nifA; Nif-specific regulatory protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.