Detailed information of ANN39052-RA in Montipora grisea

Genomic Location: Scaffold_8901__1_contigs__length_21263:1234...4239
NR annotation: MCP4094711.1, excinuclease ABC subunit UvrC [Planctomycetaceae bacterium]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6LZA1UvrABC system protein C OS=Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL) OX=267377 GN=uvrC PE=3 SV=1
C1A8T0UvrABC system protein C OS=Gemmatimonas aurantiaca (strain DSM 14586 / JCM 11422 / NBRC 100505 / T-27) OX=379066 GN=uvrC PE=3 SV=1
Q3AFE5UvrABC system protein C OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=uvrC PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0048647 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08459
all species →		UvrC_RNaseH_domUvrC RNAse H endonuclease domainDomainInterproscan
PF01541
all species →		GIY-YIGGIY-YIG catalytic domainDomainInterproscan
PF13360
all species →		PQQ_2PQQ-like domainRepeatInterproscan
PF02151
all species →		UVRUvrB/uvrC motifFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035901
all species →		Homologous_superfamilyGIY-YIG endonuclease superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001162
all species →		DomainUvrC, RNAse H endonuclease domainInterproscan
IPR018391
all species →		RepeatPyrrolo-quinoline quinone beta-propeller repeatInterproscan
IPR038476
all species →		Homologous_superfamilyUvrC, RNAse H endonuclease domain superfamilyInterproscan
IPR000305
all species →		DomainGIY-YIG endonucleaseInterproscan
IPR002372
all species →		RepeatPyrrolo-quinoline quinone repeatInterproscan
IPR001943
all species →		DomainUVR domainInterproscan
IPR047296
all species →		DomainUvrC/Cho-like, GIY-YIG domainInterproscan
IPR036876
all species →		Homologous_superfamilyUVR domain superfamilyInterproscan
IPR011047
all species →		Homologous_superfamilyQuinoprotein alcohol dehydrogenase-like superfamilyInterproscan
IPR050066
all species →		FamilyUvrABC system protein CInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30562
all species →		UVRC/OXIDOREDUCTASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0009381
all species →		Molecular Functionexcinuclease ABC activityInterproscan
GO:0006289
all species →		Biological Processnucleotide-excision repairInterproscan
GO:0006974
all species →		Biological ProcessDNA damage responseInterproscan
GO:0009380
all species →		Cellular Componentexcinuclease repair complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN39052-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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