Genomic Location: Scaffold_1571__1_contigs__length_53137:24719...27531
NR annotation: WP_282485931.1, AAA family ATPase [Candidatus Megaira polyxenophila]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN39079-RA |
| Transcript |
| ANN39079-RA |
| Protein |
| ANN39079-RA |
| UniProt accession | Description |
|---|---|
| O34481 | ATP-dependent RecD2 DNA helicase OS=Bacillus subtilis (strain 168) OX=224308 GN=recD2 PE=1 SV=1 |
| Q9RT63 | ATP-dependent RecD2 DNA helicase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1) OX=243230 GN=recD2 PE=1 SV=1 |
| A0QS28 | RecBCD enzyme subunit RecD OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=recD PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008426 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13538 all species → | UvrD_C_2 | UvrD-like helicase C-terminal domain | Domain | Interproscan |
| PF13245 all species → | AAA_19 | AAA domain | Domain | Interproscan |
| PF18335 all species → | SH3_13 | ATP-dependent RecD-like DNA helicase SH3 domain | Domain | Interproscan |
| PF00589 all species → | Phage_integrase | Phage integrase family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011010 all species → | Homologous_superfamily | DNA breaking-rejoining enzyme, catalytic core | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR050534 all species → | Family | Coronaviruses polyprotein 1ab | Interproscan |
| IPR002104 all species → | Domain | Integrase, catalytic domain | Interproscan |
| IPR027785 all species → | Domain | UvrD-like helicase C-terminal domain | Interproscan |
| IPR041451 all species → | Domain | ATP-dependent RecD2 DNA helicase, SH3 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43788 all species → | DNA2/NAM7 HELICASE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0006310 all species → | Biological Process | DNA recombination | Interproscan |
| GO:0009338 all species → | Cellular Component | exodeoxyribonuclease V complex | Interproscan |
| GO:0017116 all species → | Molecular Function | single-stranded DNA helicase activity | Interproscan |
| GO:0043139 all species → | Molecular Function | 5'-3' DNA helicase activity | Interproscan |
| GO:0015074 all species → | Biological Process | DNA integration | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03581 | recD; exodeoxyribonuclease V alpha subunit | EC:3.1.11.5 | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
