Gene detail

Detailed information of ANN39087-RA in Montipora grisea

Genomic Location: Scaffold_2657__1_contigs__length_40962:21374...22545
NR annotation: WP_216737251.1, sigma-54 dependent transcriptional regulator [Hahella sp. HN01]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P12626	Nitrogen fixation protein AnfA OS=Azotobacter vinelandii OX=354 GN=anfA PE=4 SV=1
Q06065	Regulatory protein AtoC OS=Escherichia coli (strain K12) OX=83333 GN=atoC PE=1 SV=2
P45671	DNA-binding transcriptional regulator NtrC OS=Azospirillum brasilense OX=192 GN=ntrC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00158	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan
PF02954	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002078	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025943	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR002197	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR011006	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR001789	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000160	Biological Process	phosphorelay signal transduction system	Interproscan