Gene detail

Detailed information of ANN39089-RA in Montipora grisea

Genomic Location: Scaffold_3238__1_contigs__length_37444:3161...6968
NR annotation: EXF47248.1, Lon protease [Pseudomonas sp. BAY1663]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN39089-RA

ATGACCGATATAAAAAAAGGTGACGGTGATAATGGCAAGCTACTTTACTGCTCTTTTTGCGGTAAAAGTCAGCACGAAGTTCGCAAGTTAATTGCGGGGCCATCTGTATTTATTTGTGACGAATGTGTCGAGTTGTGTAACGACATTATTCGCGAAGAAATTAAAGAAATTGCACCTAAGCAAGACAAATCATCACTGCCTGCACCGATAGAAATTCGCGCCAGTTTAGACGATTACGTGATTGGCCAAGAGCACGCCAAAAAAGTGCTTTCTGTTGCGGTGTACAACCACTATAAGCGTTTGCGCAATGGCGACTCTCACAATGGTGTTGAGTTGAGCAAGAGTAATATCTTGCTGATTGGTCCAACTGGTAGTGGTAAAACGCTGTTGGCAGAAACCTTAGCGCGCTTGCTAGATGTGCCGTTTACTATGGCCGATGCCACCACCTTAACCGAAGCGGGTTACGTGGGTGAAGACGTTGAAAACATCATTCAAAAGCTGTTGCAAAAATGTGATTACGACGTCGAAAAAGCCCAGCGCGGTATTGTTTACATCGATGAAATCGATAAGATTTCACGCAAGTCAGACAATCCATCAATCACCCGTGACGTTTCAGGTGAAGGTGTACAACAAGCCTTGTTAAAACTGATTGAAGGCACAGTTGCTTCAGTACCGCCACAAGGTGGTCGCAAGCACCCGCAACAAGAGTTTTTACAAGTTGATACCTCGAAAATTTTATTTATCTGTGGTGGTGCTTTTGCTGGTCTTGATAAGGTCATTGAGCAACGTGTACACACAGGTACAGGTATTGGCTTTGGCGCAGAAGTGCGAGCGAAAGATGCCGACAAGTCGTTGACGGAGCGCTTCCAAGAGGTTGAGCCAGAAGATTTAGTTAAATACGGCTTAATTCCAGAGTTTATTGGTCGTTTACCTGTGGTTGCGACTTTGAGTGAACTGGATGAAGACGCCTTAATTCAAATCTTGCAAGAGCCGAAAAATGCTCTAACCAAGCAATTTAGCGCCTTGTTTGATATGGAAGACGTCGAGCTTGAGTTTAGAGAAGACGCGCTAGTTGCCATCGCTCACAAGGCCATGGTTCGCAAAACTGGTGCTCGTGGCTTGCGTTCAATTGTTGAAGGGGTTTTACTTGATACCATGTACGAGTTGCCATCAATGGAAAACGTCAGCAAAGTAGTGGTTGATGAAACTGTGATCAAAGGCGAGTCGAAGCCGCTCGTGATTTACGAAACACCGCAAGAGCAAGCCGCTTCTGACAGTCTTTTTAGGCGAGTTTTCGCCTTTTTTTCCGAGAGAGTTTCTATGAGTAAAGCCTTGTCTGGTGTCGTTGAGATCCCTGTTTTAGCACTGCGCGATGTCGTGGTTTACCCGCAAATGGTTATTCCTTTGTTTGTCGGTCGAGAAAAGTCTATTCGCTGTTTAGATATTGCGATGGAAACCGACAAACAGATTTTTTTAGTGGCGCAAAAAGACGCCGCTATTGATGATCCAACCGCTGATGATGTTTATCCAACGGGTACTGTTGCCACCATTTTGCAAATGTTGAAATTACCCGATGGCACGGTAAAAGTATTGGTTGAAGGTTTGCAGCGGGCAACGGTTGAAAGCTTTATTGAAACTGAAGAAAAGTTTATTGCCGATATTCAATATTTAACTTCTGAGCCAGTACAAGAAGATGACACTGAAGTGCTGATGCGCTCAGCGTTATCTCAATTTGAAGGCTATGTGAAGCTCAATAAAAAAATCCCACCTGAGGTACTAACCTCAGTGTCTGGTATCGAAGATGCTGAGCAACTGGCTGATACTATGGCTGCTCATATGCCGTTAAAGCTCGTTGATAAACAAAAAGTGCTGGAAATTAACAGTGTCACTGAGCGCTTAGAATACCTAATGGCGCAAATGGAAGGTGAAATTGATTTGCTGCAGGTGGAGAAAAAAATCCGCACCCGGGTTAAAAAGCAAATGGAGAAAAGCCAGCGCGAGTACTACCTCAACGAGCAAATGAAAGCGATTCAAAAAGAGCTCGGCGACATGGACGAGGTTCCCGATGAAGCTGAGCAATTGAATAAAAAAATCGATGAGGCGCAAATGCCAAAAGAAGCTAAGGAAAAAACCTTAGCAGAATTGCAAAAGTTAAAAATGATGTCGCCAATGTCGGCAGAAGCAACGGTAGTGCGCAGTTATATCGATTGGATGATTAGCGTCCCGTGGAAAAAGCGCAGTAAATTAAAGCGCAACTTAAAGCTCGCCGAAGAAGTGCTTGAGAAAGATCACTACGGCTTAGACAAAGTTAAAGAGCGCATTTTAGAGTATTTGGCGGTACAACAACGAGTTAGTCAACTCAAAGGACCTATTTTGTGTTTAGTTGGGCCTCCTGGGGTTGGTAAAACGTCACTGGGTCAATCGATTGCCAAATCTACCGGACGTAAATACGTGCGTATGGCATTAGGTGGCGTGCGCGACGAAGCCGAAATTCGCGGCCATCGCCGTACTTACATCGGTTCACTGCCGGGTAAATTAATTCAAAAAATGGCGAAAGCTGGCGTTAAAAACCCGCTGTTCTTACTCGATGAAATCGATAAAATGTCGTCTGATATGCGCGGTGACCCAGCATCGGCCTTGTTAGAAGTATTAGACCCAGAGCAAAACACCAGCTTTAACGATCACTATTTAGAAGTGGATTACGACTTGTCAGATGTGATGTTTGTCGCCACCTCTAACAGCATGAATATCCCTGGGCCATTACTTGATCGCATGGAAGTGATTCGCCTGTCGGGCTACACCGAAGACGAAAAGCTTAATATTGCTAAGCGTCATTTGTTGAATAAACAGATTGAGCGCAATGGCTTAAAAGCGAAAGAAATTGAGATTGATGACAGCGCTTTGATTGGCATTATTCGCTACTACACCCGCGAAGCTGGCGTGCGTAGCTTAGAGCGTGAAATCTCAAAATTATGTCGCAAAGCGGTAAAAGAAATTTTATTGGATAAAGATCTTAAGAAAGTCACTATCAATCAAAATAACTTGAGTGACTACTTAGGTGTGCAGCGTTTTGACTATGGCAAAGCCGACGATGAAAATCGCGTTGGTTTAGTGACAGGCTTGGCGTGGACTGAAGTTGGCGGAGAGTTGTTGACTATTGAAACGGCGTCTGTACCGGGTAAAGGCAAGCTTAGCTACACTGGCTCGCTGGGCGACGTTATGCAAGAGTCAATTCAAGCGGCAATGACTGTGGTGCGAAGCCGCACGGAAAAGCTGCGCATTAACGACGATTTTTACGAGAAGCGCGATATTCACGTCCATGTACCTGAAGGAGCGACACCAAAAGATGGTCCAAGCGCTGGTATTGGTATGTGTACCGCCTTGGTTTCTAGCCTAACGGGTAACCCAGTGAAAGCGGATGTTGCCATGACCGGCGAAATTACCTTACGCGGTGAAGTACTTGCGATTGGCGGTTTAAAAGAGAAGTTGTTAGCAGCTCATCGCGGCGGTATTAAAACAGTGGTCATTCCAAAAGACAACGAGCGCGATTTGCGTGAAATTCCAGACAACGTCAAGGCTGATTTGGCGATTCACCCAGTGAAATGGATTGATGAAGTGTTGGCGATTGCCTTGGAGCAACCCGTTGAAAAATGGCAGATTGAGGAAAAAAGCGCCTAA

Transcript

ANN39089-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P74956	Lon protease OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=lon PE=3 SV=2
P0A9M1	Lon protease OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=lon PE=3 SV=1
P0A9M0	Lon protease OS=Escherichia coli (strain K12) OX=83333 GN=lon PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001329 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05362 all species →	Lon_C	Lon protease (S16) C-terminal proteolytic domain	Domain	Interproscan
PF02190 all species →	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan
PF06689 all species →	zf-C4_ClpX	ClpX C4-type zinc finger	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF10431 all species →	ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	Domain	Interproscan
PF07724 all species →	AAA_2	AAA domain (Cdc48 subfamily)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010603 all species →	Domain	Zinc finger, ClpX C4-type	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR003111 all species →	Domain	Lon protease, N-terminal domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR008269 all species →	Domain	Peptidase S16, Lon proteolytic domain	Interproscan
IPR004487 all species →	Family	Clp protease, ATP-binding subunit ClpX	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR046425 all species →	Family	Clp protease, ATP-binding subunit ClpX, bacteria	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR004815 all species →	Family	Lon protease, bacterial/eukaryotic-type	Interproscan
IPR019489 all species →	Domain	Clp ATPase, C-terminal	Interproscan
IPR046336 all species →	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan
IPR038366 all species →	Homologous_superfamily	Zinc finger, ClpX C4-type superfamily	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR027543 all species →	Family	Lon protease, bacterial	Interproscan
IPR027065 all species →	Family	Lon protease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10046 all species →	ATP DEPENDENT LON PROTEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0030163 all species →	Biological Process	protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01338	lon; ATP-dependent Lon protease	EC:3.4.21.53	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.