Gene detail

Detailed information of ANN39128-RA in Montipora grisea

Genomic Location: Scaffold_5825__1_contigs__length_28475:25998...27078
NR annotation: CAE7492441.1, rplA [Symbiodinium microadriaticum]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2S691	Large ribosomal subunit protein uL11 OS=Brucella abortus (strain S19) OX=430066 GN=rplK PE=3 SV=1
Q2YM11	Large ribosomal subunit protein uL11 OS=Brucella abortus (strain 2308) OX=359391 GN=rplK PE=3 SV=1
Q57CP4	Large ribosomal subunit protein uL11 OS=Brucella abortus biovar 1 (strain 9-941) OX=262698 GN=rplK PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004091 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02357 all species →	NusG	Transcription termination factor nusG	Domain	Interproscan
PF03946 all species →	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain	Domain	Interproscan
PF00467 all species →	KOW	KOW motif	Family	Interproscan
PF00298 all species →	Ribosomal_L11	Ribosomal protein L11, RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000911 all species →	Family	Ribosomal protein uL11	Interproscan
IPR001062 all species →	Family	Transcription antitermination protein, NusG	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR047050 all species →	Domain	NusG, N-terminal	Interproscan
IPR006645 all species →	Domain	NusG-like, N-terminal	Interproscan
IPR036769 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Interproscan
IPR036796 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Interproscan
IPR036735 all species →	Homologous_superfamily	NusG, N-terminal domain superfamily	Interproscan
IPR006519 all species →	Family	Large ribosomal subunit protein uL11, bacterial-type	Interproscan
IPR020784 all species →	Domain	Large ribosomal subunit protein uL11, N-terminal	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR043425 all species →	Family	NusG-like	Interproscan
IPR005824 all species →	Domain	KOW	Interproscan
IPR020783 all species →	Domain	Large ribosomal subunit protein uL11, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30265 all species →	RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0032784 all species →	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0006354 all species →	Biological Process	DNA-templated transcription elongation	Interproscan
GO:0140673 all species →	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN39128-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.