Gene detail

Detailed information of ANN39171-RA in Montipora grisea

Genomic Location: Scaffold_9787__1_contigs__length_16407:4567...5657
NR annotation: MXW91942.1, L-carnitine dehydrogenase [Rhodospirillaceae bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q98CR3	L-carnitine dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=mlr5041 PE=3 SV=1
Q92NF5	L-carnitine dehydrogenase/betainyl-CoA thioesterase OS=Rhizobium meliloti (strain 1021) OX=266834 GN=bcoE-bcoF PE=1 SV=1
D7UNT2	L-carnitine dehydrogenase/betainyl-CoA thioesterase OS=Rhizobium sp. OX=391 GN=Rs-cdh PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026578	Family	L-carnitine dehydrogenase	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR013328	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48075	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0050104	Molecular Function	L-gulonate 3-dehydrogenase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17735	lcdH, cdhA; carnitine 3-dehydrogenase	EC:1.1.1.108	Enzymes with EC numbers	-	deepkoala