Gene detail

Detailed information of ANN39242-RA in Montipora grisea

Genomic Location: Scaffold_8208__1_contigs__length_23141:9531...11891
NR annotation: WP_170791790.1, xanthine dehydrogenase family protein molybdopterin-binding subunit [Ruegeria lacuscaerulensis]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN39242-RA

ATGCCCAAAGATAGTGGCATCGGAGCCAGTTCCAAGCGGCGTGAGGACGTGCGCTTTCTGACCGGAGCAGGCAACTACACCGACGATATCAACGTGGCCGGACAGGCCTATGTATATTTCCTGCGCTCGGACATCGCGCATGGACGGATCAACAGCATCGATACCTCGGCTGCAGAAACTATGCCGGGTGTAGTCAAGGTATTTACCGGCAAGGATTTTGAAGGCGTGGGGGGCATTCCCTGCGGCTGGGAAGTGACGGATCGACATGGCGCGCCCATGCAAGAACCGGCGCACCCCATTCTGGCGCAGGGCAAGGTGCGCCATGTGGGAGATCCGATCGCCGCAGTGGTGGCCGACAGTCTTGCTGAAGCACGCGACGCCGCCGAGGCGATCGATTTGGATATCGAAGAACTGCCCGCCGTGATCGACATGAAGGCCGCCGCGCAAGAAGGCGCGACGCTAGTCCATGACGACCTGAAGAACAACATTTGCTATGACTGGCATTTGGGTGAGGCAGACAACGACAAGGTCAATGAGGTGTTCGCCAATGCGGCCCATGTGACCACGCTGGATCTCGTGAACAACCGCTTGGTCGCCAACCCGATGGAGCCGCGTGTGGCGGTGGCGGAATACAGCCGCGGGACCGAGGAATACACGCTCTATACCACTTCGCAGAACCCGCATGTGATCCGGCTGCTGATGTGCGCCTTCGTGCTGGGCCTGCCCGAGCATAAGGTCCGCGTGGTGGCTCCGGATGTGGGCGGTGGCTTTGGCACCAAGATCTTCCACTATGCGGAAGAGGCGTTTGTGACCTTTGCGGCCAAGGCCTGCAACCGGCCCGTCAAATGGTCGGCCAGCCGGTCCGAGGCGTTCATGTCGGATGCCCATGGCCGCGATCATGTCAGCACGATTGAGCTGGCGCTGGATGCCGACAACAACTTTATCGGTCTCCGGACCAACACCTATGCCAATCTGGGGGCGTATCTGTCGACCTTCTCCAGCTCGGTTCCGACCTGGCTACATGGCACACTGATGGCGGGCAATTACAAGACACCGGTTATTCAGGTAAACGTGAAGGCGATGTTCACCAACACGGTGCCGGTGGATGCCTATCGCGGCGCGGGTCGACCCGAGGCGACCTATCAGCTGGAACGCGTAGTGGACAAAGCCGCACGCGAGTTGGGCGTCGATCCGATCGCGCTGCGCCGTCAGAACTTCATCACCCAGTTCCCCTATGACACGCCCGTCGCTCTGACCTATGACACCGGGGACTATAATGGGACCATGGACAAGCTTGAGGCCGCCGCCGATCTGGCAGGCTTTGCCGCCCGCCGGGCGCAGAGCGAGGCCAATGGCAAGCTGCGGGGCCTGGGCATCAACTGCTATATCGAGGCCTGTGGCATTGCGCCGTCGAATATCGTTGGCATGCTGGGGGCCCGGGCGGGTCTTTATGATGCGGCGACCGTGCGGGTGAACGCCACCGGCTCGATCATTGTCATGGTGGGGGCACACAGCCACGGGCAGGGGCATGAGACCGCCTTCCCTCAGGTTGTGGCCGACATGATCGGCATCGACGAGTCGATGGTCGAGATTGTGCATGGCGACACCTCGAAAATCCCGTTTGGCATGGGCACCTATGGCTCGCGCTCGCTGGCCGTTTGTGGCTCGGCTATGGTCAAGGCAACCGAAAAGGTGATCGAGAAGGCCAAGAAGATCGCTGCGCATCTGCTGGAGGCGTCCGAGGCCGATATCGAGCTGAAGGACGGTCAGTTCAGCGTGGCAGGCACGGACAAGTCTGTTGCCTGGGGCGATGTGACCCTGACAGCCTATGTGCCGCACAACTATCCTTTGGAAGTTGAGCCGGGTCTGGAGGAAACCGCGTTCTACGACCCGGCCAACTTCACCTATCCAGCGGGTGCCTATGCCTGCGAGGTCGAAGTCGATCCGGAAACCGGTCAGGTCAGCATTGAGGCGTTCACTGCTGCGGATGACTTTGGCAACATCGTTAATCCGATGATTGTGGATGGCCAGGTCCATGGCGGTATCGGTCAAGGCATCGGTCAGGCGCTGCTGGAAAACTGTGCCTATGACGAGAACGGCCAGCTGCTGAGCGCATCTTTCATGGATTACGCCATGCCGCGCGCCGATGACGTGCCTTTCTATGGTGTGGACCATTCCAGCCAGACGCCGTGCACGCATAACCCGTTGGGGGTGAAGGGCTGTGGAGAGGCCGGAGCCATTGGCTCGCCGCCAGCGGTGGTCAATGCGGTGCTGGATGCGCTGAACTCGGGTGGCAAGGCGGTTGCGCATATTGACATGCCCGTAAGCCCGTCGCGCGTTTGGGCGGCGATGAACAGCTGA

Transcript

ANN39242-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P19913	Carbon monoxide dehydrogenase large chain OS=Hydrogenophaga pseudoflava OX=47421 GN=cutL PE=1 SV=2
Q93NH5	Nicotine 6-hydroxylase large subunit OS=Paenarthrobacter nicotinovorans OX=29320 GN=ndhL PE=1 SV=1
P19919	Carbon monoxide dehydrogenase large chain OS=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) OX=504832 GN=coxL PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0016661 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20256 all species →	MoCoBD_2	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF02738 all species →	MoCoBD_1	Molybdopterin cofactor-binding domain	Domain	Interproscan
PF01315 all species →	Ald_Xan_dh_C	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016208 all species →	Family	Aldehyde oxidase/xanthine dehydrogenase-like	Interproscan
IPR037165 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Interproscan
IPR046867 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain	Interproscan
IPR008274 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Interproscan
IPR000674 all species →	Domain	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Interproscan
IPR036856 all species →	Homologous_superfamily	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11908 all species →	XANTHINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03520	coxL, cutL; aerobic carbon-monoxide dehydrogenase large subunit	EC:1.2.5.3	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.